Magnesium in PDB 9d2b: Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule

The binding sites of Magnesium atom in the Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule (pdb code 9d2b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule, PDB code: 9d2b:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:12.4 occ:1.00 O1G C:GTP501 2.0 12.9 1.0 O1B C:GTP501 2.3 12.8 1.0 PG C:GTP501 3.4 12.9 1.0 PB C:GTP501 3.5 12.7 1.0 O3B C:GTP501 3.7 12.8 1.0 OD2 C:ASP69 4.0 19.1 1.0 CB C:GLN11 4.1 14.6 1.0 O2G C:GTP501 4.2 13.0 1.0 OE1 C:GLU71 4.2 25.8 0.0 OD1 C:ASP69 4.3 19.2 1.0 CB C:ASP98 4.3 27.5 0.0 CB C:GLU71 4.4 24.3 0.0 OE1 C:GLN11 4.4 14.9 1.0 O3G C:GTP501 4.4 12.9 1.0 N C:GLN11 4.4 14.3 1.0 O3A C:GTP501 4.5 12.8 1.0 O2B C:GTP501 4.5 12.7 1.0 CG C:ASP69 4.6 19.0 1.0 OG1 C:THR145 4.7 17.4 1.0 CA C:GLN11 4.8 14.4 1.0 CD C:GLU71 4.9 25.8 0.0 OD2 C:ASP98 5.0 28.3 0.0

Magnesium binding site 2 out of 3 in the Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:11.0 occ:1.00 O1G B:G2P501 2.1 12.5 1.0 O1B B:G2P501 2.4 12.5 1.0 PG B:G2P501 3.4 12.4 1.0 O2G B:G2P501 3.7 12.6 1.0 PB B:G2P501 3.8 12.5 1.0 OE1 B:GLU69 3.9 26.2 1.0 CD B:GLU69 4.1 26.2 1.0 O3B B:G2P501 4.2 12.4 1.0 CG B:GLU69 4.3 25.7 1.0 O1A B:G2P501 4.3 12.8 1.0 CB B:GLN11 4.4 14.2 1.0 O3G B:G2P501 4.5 12.5 1.0 N B:GLN11 4.5 13.5 1.0 C3A B:G2P501 4.7 12.7 1.0 OE1 B:GLN11 4.7 15.4 1.0 OE2 B:GLU69 4.7 26.2 1.0 OD1 B:ASP67 4.8 17.8 1.0 OD2 B:ASP67 4.8 17.9 1.0 O2B B:G2P501 4.9 12.5 1.0 PA B:G2P501 5.0 12.7 1.0

Magnesium binding site 3 out of 3 in the Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Symmetry-Expanded Reconstruction of Augmin T-II Bonsai on the Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:8.3 occ:1.00 O1G A:GTP501 1.5 8.7 1.0 O1B A:GTP501 2.1 8.8 1.0 PG A:GTP501 3.0 8.7 1.0 PB A:GTP501 3.4 8.7 1.0 O3B A:GTP501 3.7 8.7 1.0 OE2 A:GLU71 3.7 24.5 1.0 O2G A:GTP501 3.8 8.7 1.0 O3G A:GTP501 3.9 8.7 1.0 NZ B:LYS252 3.9 20.3 1.0 CB A:GLN11 4.2 11.9 1.0 O3A A:GTP501 4.2 8.9 1.0 OD2 A:ASP69 4.4 16.6 1.0 OE1 A:GLN11 4.5 12.0 1.0 OD1 A:ASP69 4.5 16.6 1.0 O2B A:GTP501 4.5 8.8 1.0 O1A A:GTP501 4.5 9.0 1.0 CB A:ASP98 4.6 20.6 1.0 N A:GLN11 4.6 11.8 1.0 OD2 A:ASP98 4.8 21.1 1.0 PA A:GTP501 4.8 9.0 1.0 O2A A:GTP501 4.8 9.1 1.0 CG A:ASP69 4.9 16.5 1.0 CD A:GLU71 4.9 23.9 1.0 CE B:LYS252 4.9 20.2 1.0

S.M.Travis, J.Kraus, C.T.Mcmanus, J.Golden, R.Zhang, S.Petry. How Augmin Establishes the Angle of the Microtubule Branch Site To Be Published.