Magnesium in PDB 9d2p: PANK3 Complex Structure with Compound Pz-4127

All present enzymatic activity of PANK3 Complex Structure with Compound Pz-4127:
2.7.1.33;

The structure of PANK3 Complex Structure with Compound Pz-4127, PDB code: 9d2p was solved by M.Yun, R.E.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.96 / 1.80
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	97.927, 97.927, 69.061, 90, 90, 120
R / Rfree (%)	17.7 / 22

The structure of PANK3 Complex Structure with Compound Pz-4127 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the PANK3 Complex Structure with Compound Pz-4127 (pdb code 9d2p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the PANK3 Complex Structure with Compound Pz-4127, PDB code: 9d2p:

Magnesium binding site 1 out of 1 in the PANK3 Complex Structure with Compound Pz-4127


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of PANK3 Complex Structure with Compound Pz-4127 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:32.5 occ:1.00 O1B A:ADP405 2.0 26.3 1.0 O A:HOH535 2.1 27.5 1.0 O A:HOH502 2.2 38.0 1.0 O A:HOH556 2.2 36.4 1.0 O A:HOH553 2.2 30.3 1.0 O A:HOH558 2.3 32.3 1.0 PB A:ADP405 3.3 27.8 1.0 O2B A:ADP405 3.7 23.0 1.0 O3A A:ADP405 3.9 24.9 1.0 NZ A:LYS24 3.9 22.4 1.0 OE2 A:GLU138 3.9 70.3 1.0 O1A A:ADP405 4.0 21.9 1.0 O A:HOH545 4.1 32.6 1.0 O A:HOH599 4.2 30.4 1.0 OD2 A:ASP17 4.3 26.5 1.0 O3B A:ADP405 4.4 27.0 1.0 PA A:ADP405 4.4 28.2 1.0 CA A:GLY19 4.5 24.9 1.0 O A:HOH527 4.5 36.4 1.0 ND2 A:ASN189 4.5 30.3 1.0 OD1 A:ASP17 4.5 26.9 1.0 CE A:LYS24 4.7 22.5 1.0 CH3 A:ACY402 4.7 40.4 1.0 O A:HOH597 4.7 47.2 1.0 O2A A:ADP405 4.8 28.1 1.0 OD1 A:ASN189 4.8 28.4 1.0 CG A:ASP17 4.8 27.5 1.0 O A:HOH585 5.0 32.6 1.0

M.Yun, R.E.Lee. 2-(4-Aminophenyl)Acetamide Derivatives As Pantothenate Kinase Inhibitors. To Be Published.