Magnesium in PDB 9d45: Cryo-Em Structure of Yeast Exportin MSN5 Bound to Cargo PHO4 and Rangtp

The binding sites of Magnesium atom in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Cargo PHO4 and Rangtp (pdb code 9d45). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Cargo PHO4 and Rangtp, PDB code: 9d45:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Cargo PHO4 and Rangtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Yeast Exportin MSN5 Bound to Cargo PHO4 and Rangtp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:136.3 occ:1.00 OG1 B:THR44 2.4 128.4 1.0 O3G B:GTP201 2.5 143.5 1.0 O1B B:GTP201 2.7 148.8 1.0 O2B B:GTP201 2.7 140.6 1.0 CB B:THR44 2.8 128.2 1.0 O2G B:GTP201 2.8 147.2 1.0 PB B:GTP201 2.8 142.1 1.0 PG B:GTP201 3.0 145.1 1.0 OG1 B:THR26 3.1 117.3 1.0 O3B B:GTP201 3.2 139.3 1.0 O B:THR68 3.6 118.4 1.0 NZ B:LYS25 3.6 122.8 1.0 CG2 B:THR44 3.8 126.2 1.0 CE B:LYS25 3.9 121.0 1.0 N B:THR44 3.9 130.5 1.0 OD1 B:ASP67 3.9 140.6 1.0 CA B:THR44 3.9 128.9 1.0 OD2 B:ASP67 4.2 144.4 1.0 O3A B:GTP201 4.4 144.1 1.0 CG B:ASP67 4.4 142.1 1.0 O1G B:GTP201 4.5 146.5 1.0 N B:GLY70 4.5 129.4 1.0 CB B:THR26 4.5 115.9 1.0 CA B:ALA69 4.5 120.9 1.0 C B:THR68 4.6 116.9 1.0 N B:THR26 4.6 117.2 1.0 CB B:LYS25 4.7 120.2 1.0 O B:THR44 4.7 128.8 1.0 C B:THR44 4.9 127.7 1.0 N B:ALA69 5.0 123.5 1.0 C B:ALA69 5.0 123.6 1.0

H.Y.J.Fung, S.R.Mittal, A.B.Niesman, J.Jiou, B.Shakya, T.Yoshizawa, A.E.Cansizoglu, M.P.Rout, Y.M.Chook. Phosphate-Dependent Nuclear Export Via A Non-Classical Nes Class Recognized By Exportin MSN5 Nat Commun 2025.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-025-57752-3