Magnesium in PDB 9dh9: State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+

The binding sites of Magnesium atom in the State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ (pdb code 9dh9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+, PDB code: 9dh9:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:43.8 occ:1.00 O3B A:ADP4701 2.5 45.4 1.0 O2A A:ADP4701 3.5 45.4 1.0 PB A:ADP4701 4.0 45.4 1.0 OD2 A:ASP1958 4.1 38.6 1.0 OD1 A:ASP1958 4.2 38.6 1.0 OE2 A:GLU1959 4.6 41.0 1.0 CG A:ASP1958 4.6 38.6 1.0 O3A A:ADP4701 4.7 45.4 1.0 O1B A:ADP4701 4.7 45.4 1.0 PA A:ADP4701 4.7 45.4 1.0 N A:GLY1909 4.9 37.5 1.0 O2B A:ADP4701 5.0 45.4 1.0

Magnesium binding site 2 out of 3 in the State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:31.7 occ:1.00 O1B A:ATP4702 2.0 28.1 1.0 OG A:SER2231 2.1 28.4 1.0 OE1 A:GLU2344 2.4 30.4 1.0 PB A:ATP4702 2.9 28.1 1.0 O3B A:ATP4702 2.9 28.1 1.0 CB A:SER2231 3.2 28.4 1.0 CD A:GLU2344 3.4 30.4 1.0 O2A A:ATP4702 3.6 28.1 1.0 OE2 A:GLU2344 3.9 30.4 1.0 O3A A:ATP4702 3.9 28.1 1.0 PG A:ATP4702 4.0 28.1 1.0 O1G A:ATP4702 4.0 28.1 1.0 O2B A:ATP4702 4.1 28.1 1.0 N A:SER2231 4.1 28.4 1.0 NH1 A:ARG2726 4.2 29.7 1.0 CA A:SER2231 4.2 28.4 1.0 OD2 A:ASP2304 4.4 34.6 1.0 PA A:ATP4702 4.4 28.1 1.0 O3G A:ATP4702 4.5 28.1 1.0 OE2 A:GLU2688 4.5 33.1 1.0 CG A:GLU2344 4.6 30.4 1.0 NH2 A:ARG2726 4.7 29.7 1.0 NH2 A:ARG2684 4.7 31.4 1.0 NH1 A:ARG2729 4.8 28.8 1.0 CZ A:ARG2726 4.9 29.7 1.0

Magnesium binding site 3 out of 3 in the State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of State-7-Post-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4707 b:40.0 occ:1.00 O3G A:ANP4703 2.0 36.6 1.0 OG1 A:THR2602 2.0 36.6 1.0 O2B A:ANP4703 2.6 36.6 1.0 N3B A:ANP4703 2.7 36.6 1.0 PG A:ANP4703 2.9 36.6 1.0 CB A:THR2602 2.9 36.6 1.0 PB A:ANP4703 3.3 36.6 1.0 CG2 A:THR2602 3.8 36.6 1.0 O1A A:ANP4703 3.9 36.6 1.0 O2G A:ANP4703 3.9 36.6 1.0 O1G A:ANP4703 4.0 36.6 1.0 N A:THR2602 4.0 36.6 1.0 CA A:THR2602 4.1 36.6 1.0 O3A A:ANP4703 4.3 36.6 1.0 O1B A:ANP4703 4.4 36.6 1.0 PA A:ANP4703 4.5 36.6 1.0 O2A A:ANP4703 4.8 36.6 1.0 OD2 A:ASP2664 4.9 39.0 1.0 OE2 A:GLU2665 4.9 39.3 1.0 NH2 A:ARG3088 5.0 42.5 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.