Magnesium in PDB 9dha: State-7-Post-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+

The binding sites of Magnesium atom in the State-7-Post-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ (pdb code 9dha). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-7-Post-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+, PDB code: 9dha:

Magnesium binding site 1 out of 1 in the State-7-Post-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-7-Post-1 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:68.3 occ:1.00 O1B A:ATP4702 2.0 74.0 1.0 O2G A:ATP4702 2.1 74.0 1.0 OG A:SER2231 2.3 71.6 1.0 O3B A:ATP4702 2.3 74.0 1.0 PB A:ATP4702 2.6 74.0 1.0 PG A:ATP4702 2.8 74.0 1.0 OE2 A:GLU2344 2.8 77.9 1.0 CD A:GLU2344 3.2 77.9 1.0 OE1 A:GLU2344 3.3 77.9 1.0 O3A A:ATP4702 3.4 74.0 1.0 CB A:SER2231 3.4 71.6 1.0 O3G A:ATP4702 3.7 74.0 1.0 NH1 A:ARG2729 3.7 73.7 1.0 N A:SER2231 3.9 71.6 1.0 O2B A:ATP4702 3.9 74.0 1.0 O1G A:ATP4702 4.0 74.0 1.0 O2A A:ATP4702 4.0 74.0 1.0 OE2 A:GLU2688 4.1 82.4 1.0 NH2 A:ARG2726 4.2 76.0 1.0 PA A:ATP4702 4.2 74.0 1.0 CA A:SER2231 4.3 71.6 1.0 CG A:GLU2344 4.3 77.9 1.0 CZ A:ARG2729 4.3 73.7 1.0 NH2 A:ARG2729 4.6 73.7 1.0 NH1 A:ARG2726 4.6 76.0 1.0 O1A A:ATP4702 4.6 74.0 1.0 CB A:LYS2230 4.8 69.8 1.0 CZ A:ARG2726 4.8 76.0 1.0 C A:LYS2230 5.0 69.8 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.