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Magnesium in PDB 9dlx: Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 and ARP2-ARPC1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 and ARP2-ARPC1 (pdb code 9dlx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 and ARP2-ARPC1, PDB code: 9dlx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 9dlx

Go back to Magnesium Binding Sites List in 9dlx
Magnesium binding site 1 out of 2 in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 and ARP2-ARPC1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 and ARP2-ARPC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:127.5
occ:1.00
O2B A:ATP500 2.1 153.7 1.0
O1G A:ATP500 2.1 160.2 1.0
O3B A:ATP500 2.6 161.7 1.0
PG A:ATP500 2.7 169.6 1.0
O A:GLY171 2.9 137.4 1.0
PB A:ATP500 2.9 159.3 1.0
O2G A:ATP500 3.2 156.3 1.0
O3A A:ATP500 3.9 155.7 1.0
O1B A:ATP500 4.0 154.0 1.0
C A:GLY171 4.1 130.1 1.0
O3G A:ATP500 4.1 155.3 1.0
O A:ASP172 4.3 141.2 1.0
N A:THR14 4.6 118.4 1.0
OG1 A:THR14 4.6 127.6 1.0
OD1 A:ASP169 4.7 144.4 1.0
CA A:GLY13 4.8 125.5 1.0
CG2 A:THR14 4.8 116.9 1.0
CA A:GLY171 4.9 126.5 1.0
N A:GLY171 4.9 125.1 1.0
C A:ASP172 4.9 132.2 1.0

Magnesium binding site 2 out of 2 in 9dlx

Go back to Magnesium Binding Sites List in 9dlx
Magnesium binding site 2 out of 2 in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 and ARP2-ARPC1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 and ARP2-ARPC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:93.0
occ:1.00
O2G B:ATP500 2.1 122.6 1.0
O1B B:ATP500 2.1 118.3 1.0
PB B:ATP500 3.2 115.8 1.0
O3B B:ATP500 3.2 115.6 1.0
PG B:ATP500 3.3 122.3 1.0
O1A B:ATP500 3.9 117.7 1.0
O3A B:ATP500 4.0 113.2 1.0
O1G B:ATP500 4.3 120.2 1.0
O3G B:ATP500 4.3 116.8 1.0
O2B B:ATP500 4.4 125.9 1.0
OD2 B:ASP12 4.5 125.0 1.0
PA B:ATP500 4.5 117.4 1.0
OE1 B:GLN141 4.7 124.7 1.0
NZ B:LYS19 4.8 113.3 1.0
CA B:GLY14 5.0 110.5 1.0

Reference:

A.J.Saks, K.R.Barrie, R.Dominguez. Arp 2/3 Complex with Bound Npfs To Be Published.
Page generated: Sat Aug 16 00:39:36 2025

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