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Magnesium in PDB 9dlz: Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 (pdb code 9dlz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3, PDB code: 9dlz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 9dlz

Go back to Magnesium Binding Sites List in 9dlz
Magnesium binding site 1 out of 2 in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:145.7
occ:1.00
O2B A:ATP500 2.1 162.6 1.0
O1G A:ATP500 2.1 170.8 1.0
O3B A:ATP500 2.5 171.1 1.0
PG A:ATP500 2.6 177.4 1.0
O A:GLY171 2.8 135.2 1.0
PB A:ATP500 2.8 171.4 1.0
O2G A:ATP500 3.2 164.4 1.0
O3A A:ATP500 3.8 166.5 1.0
OG1 A:THR14 3.9 115.7 1.0
O1B A:ATP500 3.9 163.8 1.0
C A:GLY171 4.0 130.2 1.0
O3G A:ATP500 4.1 164.9 1.0
N A:THR14 4.3 111.3 1.0
O A:ASP172 4.5 143.9 1.0
CA A:GLY13 4.6 116.8 1.0
CA A:GLY171 4.7 125.5 1.0
N A:GLY171 4.8 120.9 1.0
C A:ASP172 5.0 136.8 1.0
CB A:THR14 5.0 106.6 1.0
N A:ASP172 5.0 136.0 1.0

Magnesium binding site 2 out of 2 in 9dlz

Go back to Magnesium Binding Sites List in 9dlz
Magnesium binding site 2 out of 2 in the Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine ARP2/3 Complex with N-Wasp Ca Bound to ARP3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:188.4
occ:1.00
O3B B:ATP500 2.1 179.5 1.0
O2G B:ATP500 2.1 175.5 1.0
O1A B:ATP500 2.1 172.9 1.0
O1B B:ATP500 2.3 171.8 1.0
PB B:ATP500 2.4 183.4 1.0
PG B:ATP500 2.6 186.8 1.0
O3A B:ATP500 2.7 173.7 1.0
PA B:ATP500 2.8 178.0 1.0
O1G B:ATP500 3.3 176.8 1.0
O2A B:ATP500 3.4 170.7 1.0
O3G B:ATP500 3.9 174.0 1.0
O2B B:ATP500 3.9 173.8 1.0
O5' B:ATP500 4.2 173.2 1.0
CA B:GLY160 4.7 166.7 1.0
OG1 B:THR15 4.7 207.1 1.0

Reference:

A.J.Saks, K.R.Barrie, R.Dominguez. Arp 2/3 Complex with Bound Npfs To Be Published.
Page generated: Sat Aug 16 00:39:36 2025

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