Magnesium in PDB 9e0x: Cryo-Em Structure of Phi Dynein

The binding sites of Magnesium atom in the Cryo-Em Structure of Phi Dynein (pdb code 9e0x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Phi Dynein, PDB code: 9e0x:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Phi Dynein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Phi Dynein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4805 b:35.3 occ:1.00 O1B A:ADP4801 2.2 34.1 1.0 OG1 A:THR1913 2.4 45.1 1.0 O3B A:ADP4801 3.2 42.0 1.0 PB A:ADP4801 3.2 34.5 1.0 O1A A:ADP4801 3.3 53.9 1.0 CB A:THR1913 3.5 37.3 1.0 CG2 A:THR2017 4.0 36.8 1.0 OD1 A:ASP1958 4.2 47.8 1.0 N A:THR1913 4.2 32.6 1.0 NH2 A:ARG2358 4.2 39.1 1.0 O3A A:ADP4801 4.2 41.0 1.0 PA A:ADP4801 4.2 47.4 1.0 CG A:ASP1958 4.3 48.5 1.0 O2B A:ADP4801 4.4 37.1 1.0 CB A:ASP1958 4.4 40.6 1.0 CA A:THR1913 4.5 33.4 1.0 CG2 A:THR1913 4.5 39.5 1.0 NH2 A:ARG2091 4.7 40.5 1.0 OD2 A:ASP1958 4.8 50.7 1.0 O2A A:ADP4801 4.9 39.2 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Phi Dynein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Phi Dynein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4806 b:30.6 occ:1.00 OG A:SER2231 2.1 29.3 1.0 OE2 A:GLU2344 2.1 28.2 1.0 O1G A:ATP4802 2.2 40.6 1.0 O2B A:ATP4802 2.5 33.0 1.0 CD A:GLU2344 3.2 29.5 1.0 CB A:SER2231 3.4 23.2 1.0 OE2 A:GLU2688 3.4 48.3 1.0 PG A:ATP4802 3.4 34.8 1.0 OE1 A:GLU2344 3.6 34.2 1.0 PB A:ATP4802 3.7 30.0 1.0 O3B A:ATP4802 3.7 29.0 1.0 OD2 A:ASP2304 3.8 35.0 1.0 O3A A:ATP4802 4.2 34.4 1.0 OD1 A:ASP2304 4.3 39.1 1.0 NH2 A:ARG2726 4.3 30.1 1.0 O3G A:ATP4802 4.3 35.1 1.0 CD A:GLU2688 4.4 46.1 1.0 CA A:SER2231 4.4 21.6 1.0 N A:SER2231 4.5 21.7 1.0 CG A:ASP2304 4.5 33.2 1.0 CG A:GLU2344 4.5 25.6 1.0 O2G A:ATP4802 4.5 38.4 1.0 OE1 A:GLU2688 4.6 49.3 1.0 NH1 A:ARG2729 4.6 36.5 1.0 NH2 A:ARG2684 4.7 29.1 1.0 O2A A:ATP4802 4.8 33.5 1.0 O1B A:ATP4802 5.0 29.9 1.0 PA A:ATP4802 5.0 27.4 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Phi Dynein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Phi Dynein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg4805 b:23.3 occ:1.00 OG B:SER2231 2.0 27.6 1.0 O1G B:ATP4802 2.0 35.3 1.0 OE2 B:GLU2344 2.3 24.2 1.0 O2B B:ATP4802 2.8 26.9 1.0 PG B:ATP4802 3.3 29.0 1.0 CB B:SER2231 3.3 22.8 1.0 CD B:GLU2344 3.3 24.9 1.0 OE2 B:GLU2688 3.4 39.0 1.0 O3B B:ATP4802 3.6 24.5 1.0 PB B:ATP4802 3.6 26.6 1.0 OE1 B:GLU2344 3.7 31.8 1.0 OD2 B:ASP2304 3.8 35.0 1.0 O3A B:ATP4802 3.8 28.7 1.0 O3G B:ATP4802 4.1 29.3 1.0 CD B:GLU2688 4.4 39.9 1.0 CA B:SER2231 4.4 22.0 1.0 OD1 B:ASP2304 4.4 35.1 1.0 N B:SER2231 4.4 22.0 1.0 O2G B:ATP4802 4.4 27.0 1.0 NH1 B:ARG2729 4.5 33.4 1.0 CG B:ASP2304 4.5 33.7 1.0 OE1 B:GLU2688 4.5 40.4 1.0 O2A B:ATP4802 4.6 35.7 1.0 CG B:GLU2344 4.6 20.4 1.0 NH2 B:ARG2684 4.6 23.7 1.0 NH2 B:ARG2726 4.6 23.7 1.0 PA B:ATP4802 4.7 30.9 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Phi Dynein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Phi Dynein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg4806 b:30.9 occ:1.00 O1B B:ADP4801 2.6 30.4 1.0 CG2 B:THR1913 3.0 29.0 1.0 O3B B:ADP4801 3.2 35.3 1.0 O1A B:ADP4801 3.4 48.4 1.0 PB B:ADP4801 3.4 33.9 1.0 CB B:THR1913 3.7 27.6 1.0 NH2 B:ARG2358 3.8 46.6 1.0 CG2 B:THR2017 3.9 29.4 1.0 PA B:ADP4801 4.3 41.4 1.0 O3A B:ADP4801 4.4 41.0 1.0 CG B:ASP1958 4.4 39.5 1.0 N B:THR1913 4.4 28.0 1.0 CB B:ASP1958 4.4 31.9 1.0 OD1 B:ASP1958 4.4 36.0 1.0 OE2 B:GLU1959 4.6 48.0 1.0 OG1 B:THR1913 4.7 35.3 1.0 O2B B:ADP4801 4.7 33.1 1.0 CA B:THR1913 4.7 31.2 1.0 O2A B:ADP4801 4.7 29.4 1.0 OD2 B:ASP2320 4.7 52.9 1.0 OD2 B:ASP1958 4.8 43.6 1.0 CB B:THR2017 4.9 29.1 1.0

K.H.V.Nguyen, A.A.Kendrick, A.E.Leschziner. Cryo-Em Structure of Pre-Chi Dynein Bound to LIS1 To Be Published.