Magnesium in PDB 9e26: Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset)

The binding sites of Magnesium atom in the Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset) (pdb code 9e26). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset), PDB code: 9e26:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:88.1 occ:1.00 OG1 A:THR288 1.9 104.0 1.0 O2B A:ATP602 2.0 113.9 1.0 O2G A:ATP602 2.4 116.5 1.0 CB A:THR288 3.3 94.2 1.0 PB A:ATP602 3.4 100.1 1.0 PG A:ATP602 3.7 127.1 1.0 O3B A:ATP602 3.7 110.7 1.0 N A:THR288 3.9 97.5 1.0 OE1 A:GLU357 3.9 103.6 1.0 O1A A:ATP602 4.1 112.2 1.0 CA A:THR288 4.1 86.0 1.0 OE2 A:GLU312 4.1 124.7 1.0 CG2 A:THR288 4.2 96.0 1.0 O1B A:ATP602 4.2 106.0 1.0 OE1 A:GLU312 4.3 125.2 1.0 O3A A:ATP602 4.4 103.2 1.0 CD A:GLU312 4.5 125.7 1.0 O3G A:ATP602 4.6 114.1 1.0 O1G A:ATP602 4.6 112.9 1.0 CB A:LYS287 4.7 88.3 1.0 PA A:ATP602 4.8 108.0 1.0 NZ A:LYS287 4.9 105.4 1.0 C A:LYS287 4.9 88.1 1.0

Magnesium binding site 2 out of 4 in the Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:90.6 occ:1.00 OG1 B:THR288 1.9 104.6 1.0 O1B B:ADP601 2.0 115.9 1.0 PB B:ADP601 3.3 111.9 1.0 CB B:THR288 3.3 94.2 1.0 OE1 B:GLU357 3.7 103.8 1.0 N B:THR288 4.0 87.9 1.0 OE1 B:GLU312 4.0 124.4 1.0 O2B B:ADP601 4.0 118.9 1.0 O3B B:ADP601 4.0 116.3 1.0 CG2 B:THR288 4.2 92.5 1.0 CA B:THR288 4.2 84.3 1.0 O2A B:ADP601 4.2 120.9 1.0 O3A B:ADP601 4.4 109.3 1.0 PA B:ADP601 4.7 119.9 1.0 NZ B:LYS287 4.7 94.3 1.0 O1A B:ADP601 4.7 110.9 1.0 CE B:LYS287 4.8 90.4 1.0 CB B:LYS287 4.8 86.9 1.0 CD B:GLU357 4.9 102.4 1.0

Magnesium binding site 3 out of 4 in the Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:87.4 occ:1.00 OG1 D:THR288 1.9 106.3 1.0 O2B D:ATP602 1.9 115.7 1.0 O2G D:ATP602 2.4 118.7 1.0 PB D:ATP602 3.3 100.2 1.0 CB D:THR288 3.3 95.9 1.0 OE2 D:GLU312 3.3 128.0 1.0 PG D:ATP602 3.7 129.4 1.0 O3B D:ATP602 3.7 109.7 1.0 OE1 D:GLU357 3.9 102.2 1.0 N D:THR288 4.0 96.5 1.0 O1A D:ATP602 4.0 112.9 1.0 CG2 D:THR288 4.1 99.5 1.0 O1B D:ATP602 4.2 108.5 1.0 CA D:THR288 4.2 89.7 1.0 O3A D:ATP602 4.3 101.5 1.0 CD D:GLU312 4.4 127.9 1.0 O3G D:ATP602 4.6 114.0 1.0 O1G D:ATP602 4.7 114.8 1.0 PA D:ATP602 4.8 109.3 1.0 CE D:LYS287 4.8 96.9 1.0 CB D:LYS287 4.9 86.3 1.0 OE1 D:GLU312 4.9 126.6 1.0 NZ D:LYS287 4.9 103.8 1.0 CG2 D:THR380 5.0 95.3 1.0 C D:LYS287 5.0 86.0 1.0

Magnesium binding site 4 out of 4 in the Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Compact Structure of Cpaf with Two Atps and Two Adps (Under-Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:88.9 occ:1.00 OG1 E:THR288 1.9 106.3 1.0 O1B E:ADP602 2.0 114.9 1.0 CB E:THR288 3.3 97.2 1.0 PB E:ADP602 3.4 114.4 1.0 OE1 E:GLU357 3.7 105.7 1.0 N E:THR288 4.0 89.5 1.0 O2B E:ADP602 4.0 120.0 1.0 O3B E:ADP602 4.1 117.2 1.0 OE2 E:GLU312 4.1 123.8 1.0 CG2 E:THR288 4.1 94.6 1.0 CA E:THR288 4.2 87.4 1.0 O2A E:ADP602 4.3 120.6 1.0 O3A E:ADP602 4.4 109.9 1.0 NZ E:LYS287 4.6 96.5 1.0 PA E:ADP602 4.7 120.5 1.0 OE1 E:GLU312 4.7 124.0 1.0 O1A E:ADP602 4.8 110.9 1.0 CD E:GLU312 4.8 124.1 1.0 CE E:LYS287 4.8 92.1 1.0 CB E:LYS287 4.9 88.1 1.0 CD E:GLU357 4.9 103.9 1.0

I.Y.Yen, G.B.Whitfield, J.L.Rubinstein, L.L.Burrows, Y.V.Brun, P.L.Howell. Coordinated Conformational Changes in the Tad Pilus Atpase Cpaf Facilitate A Rotary Mechanism of Catalysis To Be Published.