Magnesium in PDB 9e27: Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset)

The binding sites of Magnesium atom in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset) (pdb code 9e27). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset), PDB code: 9e27:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:105.5 occ:1.00 O1G A:ATP602 2.0 144.5 1.0 OG1 A:THR288 2.1 126.8 1.0 OE1 A:GLU357 2.6 129.1 1.0 O2B A:ATP602 2.9 148.7 1.0 PG A:ATP602 3.3 149.2 1.0 CB A:THR288 3.5 125.4 1.0 CD A:GLU357 3.7 134.4 1.0 O3B A:ATP602 3.8 136.0 1.0 PB A:ATP602 4.0 141.4 1.0 OE1 A:GLU312 4.3 149.7 1.0 N A:THR288 4.3 123.6 1.0 OE2 A:GLU357 4.3 134.3 1.0 CG2 A:THR288 4.3 128.5 1.0 O2G A:ATP602 4.3 150.4 1.0 O3G A:ATP602 4.3 138.4 1.0 CA A:THR288 4.4 119.3 1.0 NH2 A:ARG217 4.4 150.6 1.0 OE2 A:GLU312 4.6 147.5 1.0 CD A:GLU312 4.7 148.1 1.0 CG A:GLU357 4.9 131.3 1.0 O1B A:ATP602 4.9 143.7 1.0 CG2 A:THR380 4.9 118.8 1.0 NZ A:LYS287 5.0 133.0 1.0

Magnesium binding site 2 out of 6 in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:124.6 occ:1.00 O1B B:ADP601 1.9 150.4 1.0 OG1 B:THR288 2.0 137.3 1.0 CB B:THR288 3.2 135.2 1.0 PB B:ADP601 3.3 150.9 1.0 OE1 B:GLU357 3.5 124.2 1.0 OE2 B:GLU312 3.5 151.3 1.0 O2B B:ADP601 4.0 152.8 1.0 O3B B:ADP601 4.0 153.2 1.0 N B:THR288 4.0 134.2 1.0 CA B:THR288 4.2 131.1 1.0 CG2 B:THR288 4.2 133.2 1.0 O2A B:ADP601 4.3 153.4 1.0 O3A B:ADP601 4.4 145.8 1.0 NZ B:LYS287 4.5 128.8 1.0 O1A B:ADP601 4.6 155.0 1.0 PA B:ADP601 4.6 156.7 1.0 CD B:GLU312 4.7 150.4 1.0 CD B:GLU357 4.7 131.4 1.0 CE B:LYS287 5.0 131.7 1.0

Magnesium binding site 3 out of 6 in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:152.1 occ:1.00 O3B C:ADP601 2.2 162.5 1.0 OG1 C:THR288 2.3 146.9 1.0 OE1 C:GLU357 3.0 142.1 1.0 PB C:ADP601 3.7 165.6 1.0 CB C:THR288 3.7 141.2 1.0 CD C:GLU357 4.1 143.8 1.0 O3A C:ADP601 4.1 162.8 1.0 O2B C:ADP601 4.3 163.9 1.0 OE1 C:GLU312 4.4 154.4 1.0 O1A C:ADP601 4.4 159.2 1.0 CG2 C:THR288 4.5 136.6 1.0 N C:THR288 4.5 135.0 1.0 O2A C:ADP601 4.5 165.3 1.0 CA C:THR288 4.6 135.7 1.0 PA C:ADP601 4.6 158.7 1.0 OE2 C:GLU357 4.7 139.8 1.0 O1B C:ADP601 4.7 165.4 1.0 CB C:GLU357 4.9 140.4 1.0 O C:GLY356 4.9 137.2 1.0 CD C:GLU312 5.0 154.7 1.0 OE2 C:GLU312 5.0 154.3 1.0

Magnesium binding site 4 out of 6 in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:113.4 occ:1.00 OG1 D:THR288 2.1 125.8 1.0 O1G D:ATP602 2.2 145.0 1.0 OE1 D:GLU357 2.3 132.8 1.0 O2B D:ATP602 2.6 150.4 1.0 CD D:GLU357 3.4 135.5 1.0 CB D:THR288 3.5 123.3 1.0 PG D:ATP602 3.6 151.8 1.0 OE2 D:GLU357 3.9 135.4 1.0 PB D:ATP602 3.9 140.2 1.0 O3B D:ATP602 3.9 137.7 1.0 OE1 D:GLU312 4.3 148.3 1.0 N D:THR288 4.3 122.1 1.0 CG2 D:THR288 4.3 127.0 1.0 CA D:THR288 4.4 117.1 1.0 NH1 D:ARG217 4.4 156.0 1.0 O2G D:ATP602 4.5 151.2 1.0 O3G D:ATP602 4.6 142.8 1.0 CG D:GLU357 4.7 132.6 1.0 OE2 D:GLU312 4.7 146.4 1.0 CD D:GLU312 4.7 147.1 1.0 NZ D:LYS287 4.7 129.7 1.0 O1B D:ATP602 4.8 145.1 1.0 O3A D:ATP602 4.9 137.9 1.0 CG2 D:THR380 4.9 118.4 1.0 CE D:LYS287 4.9 123.5 1.0 CB D:GLU357 5.0 130.7 1.0

Magnesium binding site 5 out of 6 in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:123.6 occ:1.00 O1B E:ADP601 1.9 153.6 1.0 OG1 E:THR288 2.0 137.1 1.0 CB E:THR288 3.2 134.7 1.0 PB E:ADP601 3.3 155.2 1.0 OE1 E:GLU357 3.5 127.5 1.0 OE2 E:GLU312 3.5 151.3 1.0 O2B E:ADP601 4.0 154.8 1.0 O3B E:ADP601 4.0 156.5 1.0 N E:THR288 4.0 131.5 1.0 CA E:THR288 4.2 129.7 1.0 CG2 E:THR288 4.2 133.6 1.0 O2A E:ADP601 4.3 155.6 1.0 O3A E:ADP601 4.4 147.7 1.0 NZ E:LYS287 4.5 127.8 1.0 O1A E:ADP601 4.6 158.0 1.0 PA E:ADP601 4.6 159.1 1.0 CD E:GLU312 4.7 150.8 1.0 CD E:GLU357 4.7 134.6 1.0 CE E:LYS287 5.0 132.2 1.0

Magnesium binding site 6 out of 6 in the Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Expanded Structure of Cpaf with Two Atps and Four Adps (Under- Saturated Atp/Adp Dataset) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:150.8 occ:1.00 O1B F:ADP601 2.1 168.6 1.0 OG1 F:THR288 2.3 145.9 1.0 OE1 F:GLU357 2.7 143.2 1.0 PB F:ADP601 3.5 171.9 1.0 CB F:THR288 3.7 140.7 1.0 CD F:GLU357 3.9 144.9 1.0 OE1 F:GLU312 3.9 154.9 1.0 O3B F:ADP601 4.1 166.5 1.0 O2B F:ADP601 4.2 166.4 1.0 N F:THR288 4.4 134.0 1.0 OE2 F:GLU357 4.5 139.2 1.0 O1A F:ADP601 4.5 171.7 1.0 O3A F:ADP601 4.5 166.2 1.0 CG2 F:THR288 4.5 136.1 1.0 CA F:THR288 4.6 136.1 1.0 O2A F:ADP601 4.6 166.7 1.0 PA F:ADP601 4.7 166.6 1.0 CD F:GLU312 5.0 156.2 1.0 O F:GLY356 5.0 135.5 1.0 CG F:GLU357 5.0 145.3 1.0 CB F:GLU357 5.0 142.0 1.0

I.Y.Yen, G.B.Whitfield, J.L.Rubinstein, L.L.Burrows, Y.V.Brun, P.L.Howell. Coordinated Conformational Changes in the Tad Pilus Atpase Cpaf Facilitate A Rotary Mechanism of Catalysis To Be Published.