Magnesium in PDB 9e7u: Cryo-Em Structure of NOT1:NOT8:Pief

All present enzymatic activity of Cryo-Em Structure of NOT1:NOT8:Pief:
3.1.13.4;

The binding sites of Magnesium atom in the Cryo-Em Structure of NOT1:NOT8:Pief (pdb code 9e7u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of NOT1:NOT8:Pief, PDB code: 9e7u:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of NOT1:NOT8:Pief


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of NOT1:NOT8:Pief within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:39.3 occ:1.00 OE2 C:GLU42 2.0 42.1 1.0 OD1 C:ASP40 3.0 44.3 1.0 CD C:GLU42 3.1 42.1 1.0 OD2 C:ASP40 3.2 44.3 1.0 CG C:ASP40 3.5 44.3 1.0 O C:THR41 3.6 43.2 1.0 OE1 C:GLU42 3.8 42.1 1.0 CG C:GLU42 4.1 42.1 1.0 O A:ILE122 4.3 48.5 1.0 OD2 C:ASP230 4.3 43.5 1.0 CE A:LYS124 4.4 47.1 1.0 C C:THR41 4.4 43.2 1.0 NZ A:LYS124 4.5 47.1 1.0 O C:GLN226 4.5 42.5 1.0 O C:HIS225 4.6 43.9 1.0 CD A:LYS124 4.8 47.1 1.0 CA C:GLU42 4.9 42.1 1.0 N C:THR41 4.9 43.2 1.0 N C:GLU42 4.9 42.1 1.0 CB C:ASP40 5.0 44.3 1.0 CG A:LYS124 5.0 47.1 1.0

Y.Levdansky, J.C.Deme, D.J.Turner, C.T.Piczak, F.Pekovic, A.L.Valkov, S.G.Tarasov, S.M.Lea, E.Valkov. Intracellular Pathogen Effector Reprograms Host Gene Expression By Inhibiting Mrna Decay. Nat Commun V. 16 6452 2025.
ISSN: ESSN 2041-1723
PubMed: 40651939
DOI: 10.1038/S41467-025-61194-2