Magnesium in PDB 9eh5: Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
Enzymatic activity of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
All present enzymatic activity of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation:
1.10.3.9;
Other elements in 9eh5:
The structure of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 1 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:0.0
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
0.0
|
1.0
|
NB
|
A:CLA405
|
2.0
|
0.0
|
1.0
|
NA
|
A:CLA405
|
2.1
|
0.1
|
1.0
|
ND
|
A:CLA405
|
2.1
|
0.0
|
1.0
|
NC
|
A:CLA405
|
2.2
|
0.0
|
1.0
|
NE2
|
A:HIS198
|
2.2
|
0.1
|
1.0
|
C4D
|
A:CLA405
|
3.0
|
0.0
|
1.0
|
C1B
|
A:CLA405
|
3.0
|
0.0
|
1.0
|
C4B
|
A:CLA405
|
3.0
|
0.0
|
1.0
|
C4A
|
A:CLA405
|
3.0
|
0.1
|
1.0
|
C1C
|
A:CLA405
|
3.1
|
0.0
|
1.0
|
C1A
|
A:CLA405
|
3.1
|
0.1
|
1.0
|
CE1
|
A:HIS198
|
3.1
|
0.0
|
1.0
|
C4C
|
A:CLA405
|
3.2
|
0.0
|
1.0
|
C1D
|
A:CLA405
|
3.2
|
0.0
|
1.0
|
CD2
|
A:HIS198
|
3.2
|
0.0
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
0.0
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
0.0
|
1.0
|
CHA
|
A:CLA405
|
3.4
|
0.1
|
1.0
|
CHD
|
A:CLA405
|
3.6
|
0.0
|
1.0
|
CE
|
A:MET183
|
3.9
|
0.0
|
1.0
|
CAB
|
D:CLA403
|
4.2
|
0.0
|
1.0
|
C2B
|
A:CLA405
|
4.3
|
0.0
|
1.0
|
ND1
|
A:HIS198
|
4.3
|
0.0
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
0.0
|
1.0
|
C3D
|
A:CLA405
|
4.3
|
0.0
|
1.0
|
CG
|
A:HIS198
|
4.3
|
0.0
|
1.0
|
C3A
|
A:CLA405
|
4.4
|
0.1
|
1.0
|
C2C
|
A:CLA405
|
4.4
|
0.0
|
1.0
|
C2A
|
A:CLA405
|
4.4
|
0.4
|
1.0
|
C2D
|
A:CLA405
|
4.4
|
0.0
|
1.0
|
C3C
|
A:CLA405
|
4.4
|
0.0
|
1.0
|
CBB
|
D:CLA403
|
4.9
|
0.0
|
1.0
|
CBD
|
A:CLA405
|
4.9
|
0.3
|
1.0
|
|
Magnesium binding site 2 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 2 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:0.1
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
0.1
|
1.0
|
ND
|
A:CLA406
|
2.0
|
0.0
|
1.0
|
NB
|
A:CLA406
|
2.0
|
0.1
|
1.0
|
NA
|
A:CLA406
|
2.1
|
0.1
|
1.0
|
NC
|
A:CLA406
|
2.1
|
0.0
|
1.0
|
O
|
A:HOH612
|
2.3
|
0.1
|
1.0
|
C4D
|
A:CLA406
|
2.9
|
0.1
|
1.0
|
C1B
|
A:CLA406
|
3.0
|
0.1
|
1.0
|
C4A
|
A:CLA406
|
3.0
|
0.1
|
1.0
|
C4B
|
A:CLA406
|
3.0
|
0.1
|
1.0
|
C1C
|
A:CLA406
|
3.1
|
0.1
|
1.0
|
C1A
|
A:CLA406
|
3.1
|
0.1
|
1.0
|
C1D
|
A:CLA406
|
3.1
|
0.0
|
1.0
|
C4C
|
A:CLA406
|
3.2
|
0.0
|
1.0
|
CHA
|
A:CLA406
|
3.4
|
0.1
|
1.0
|
CHB
|
A:CLA406
|
3.4
|
0.1
|
1.0
|
CHC
|
A:CLA406
|
3.4
|
0.1
|
1.0
|
CHD
|
A:CLA406
|
3.6
|
0.0
|
1.0
|
CBB
|
D:PHO402
|
4.1
|
0.2
|
1.0
|
O
|
D:HOH600
|
4.1
|
0.0
|
1.0
|
C3D
|
A:CLA406
|
4.2
|
0.1
|
1.0
|
C3B
|
A:CLA406
|
4.3
|
0.1
|
1.0
|
C2B
|
A:CLA406
|
4.3
|
0.1
|
1.0
|
C2D
|
A:CLA406
|
4.3
|
0.0
|
1.0
|
C2C
|
A:CLA406
|
4.4
|
0.0
|
1.0
|
C3A
|
A:CLA406
|
4.4
|
0.1
|
1.0
|
C2A
|
A:CLA406
|
4.4
|
0.2
|
1.0
|
C3C
|
A:CLA406
|
4.4
|
0.0
|
1.0
|
CG2
|
D:ILE178
|
4.6
|
0.1
|
1.0
|
CBA
|
A:CLA406
|
4.7
|
0.3
|
1.0
|
CE2
|
A:PHE206
|
4.8
|
0.1
|
1.0
|
CBD
|
A:CLA406
|
4.8
|
0.1
|
1.0
|
C20
|
D:PHO402
|
4.9
|
0.2
|
1.0
|
|
Magnesium binding site 3 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 3 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg408
b:1.7
occ:1.00
|
MG
|
A:CLA408
|
0.0
|
1.7
|
1.0
|
ND
|
A:CLA408
|
2.0
|
0.6
|
1.0
|
NC
|
A:CLA408
|
2.1
|
0.7
|
1.0
|
NB
|
A:CLA408
|
2.1
|
1.5
|
1.0
|
NA
|
A:CLA408
|
2.1
|
1.1
|
1.0
|
NE2
|
A:HIS118
|
2.3
|
1.0
|
1.0
|
C4D
|
A:CLA408
|
2.9
|
0.7
|
1.0
|
C1C
|
A:CLA408
|
3.1
|
0.7
|
1.0
|
C1B
|
A:CLA408
|
3.1
|
1.1
|
1.0
|
CE1
|
A:HIS118
|
3.1
|
0.7
|
1.0
|
C4A
|
A:CLA408
|
3.1
|
1.1
|
1.0
|
C4C
|
A:CLA408
|
3.1
|
0.6
|
1.0
|
C4B
|
A:CLA408
|
3.1
|
0.8
|
1.0
|
C1D
|
A:CLA408
|
3.1
|
0.8
|
1.0
|
C1A
|
A:CLA408
|
3.2
|
0.8
|
1.0
|
CD2
|
A:HIS118
|
3.4
|
0.7
|
1.0
|
CHB
|
A:CLA408
|
3.4
|
0.8
|
1.0
|
CHC
|
A:CLA408
|
3.4
|
0.8
|
1.0
|
CHA
|
A:CLA408
|
3.5
|
0.7
|
1.0
|
CHD
|
A:CLA408
|
3.5
|
0.7
|
1.0
|
CG2
|
I:VAL12
|
4.2
|
2.4
|
1.0
|
C3D
|
A:CLA408
|
4.2
|
1.1
|
1.0
|
ND1
|
A:HIS118
|
4.3
|
0.7
|
1.0
|
C2C
|
A:CLA408
|
4.3
|
0.9
|
1.0
|
C3C
|
A:CLA408
|
4.3
|
1.0
|
1.0
|
C2D
|
A:CLA408
|
4.3
|
0.9
|
1.0
|
C2B
|
A:CLA408
|
4.3
|
0.9
|
1.0
|
CG1
|
I:VAL8
|
4.4
|
4.0
|
1.0
|
C3B
|
A:CLA408
|
4.4
|
0.9
|
1.0
|
C3A
|
A:CLA408
|
4.4
|
1.1
|
1.0
|
CG
|
A:HIS118
|
4.4
|
0.8
|
1.0
|
C2A
|
A:CLA408
|
4.5
|
2.6
|
1.0
|
CG2
|
A:THR43
|
4.9
|
1.1
|
1.0
|
CBD
|
A:CLA408
|
4.9
|
1.2
|
1.0
|
|
Magnesium binding site 4 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 4 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:15.3
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
15.3
|
1.0
|
NB
|
B:CLA601
|
2.0
|
9.1
|
1.0
|
ND
|
B:CLA601
|
2.0
|
13.3
|
1.0
|
NC
|
B:CLA601
|
2.0
|
11.4
|
1.0
|
NA
|
B:CLA601
|
2.1
|
11.9
|
1.0
|
O
|
B:HOH771
|
2.6
|
17.4
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
13.0
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
10.1
|
1.0
|
C1C
|
B:CLA601
|
3.0
|
10.1
|
1.0
|
C4A
|
B:CLA601
|
3.0
|
10.9
|
1.0
|
C4B
|
B:CLA601
|
3.0
|
9.7
|
1.0
|
C4C
|
B:CLA601
|
3.1
|
11.0
|
1.0
|
C1A
|
B:CLA601
|
3.1
|
14.3
|
1.0
|
C1D
|
B:CLA601
|
3.2
|
13.1
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
9.2
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
12.9
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
14.2
|
1.0
|
CHD
|
B:CLA601
|
3.5
|
11.4
|
1.0
|
C6
|
B:LMT628
|
3.8
|
19.6
|
1.0
|
C5
|
B:LMT628
|
3.8
|
16.9
|
1.0
|
C7
|
B:LMT628
|
4.2
|
17.2
|
1.0
|
C3D
|
B:CLA601
|
4.3
|
15.4
|
1.0
|
C2C
|
B:CLA601
|
4.3
|
8.2
|
1.0
|
C2B
|
B:CLA601
|
4.3
|
10.8
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
7.5
|
1.0
|
C3C
|
B:CLA601
|
4.3
|
8.1
|
1.0
|
O
|
B:TRP185
|
4.3
|
14.2
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
12.5
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
15.2
|
1.0
|
C2A
|
B:CLA601
|
4.4
|
14.4
|
1.0
|
C8
|
B:LMT628
|
4.5
|
17.1
|
1.0
|
CE2
|
B:PHE190
|
4.6
|
5.4
|
1.0
|
CBB
|
B:CLA602
|
4.8
|
3.4
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
14.2
|
1.0
|
CBA
|
B:CLA601
|
4.9
|
18.0
|
1.0
|
CZ
|
B:PHE190
|
5.0
|
3.5
|
1.0
|
|
Magnesium binding site 5 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 5 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:1.2
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
1.2
|
1.0
|
NB
|
B:CLA602
|
2.1
|
1.4
|
1.0
|
NA
|
B:CLA602
|
2.1
|
1.8
|
1.0
|
NC
|
B:CLA602
|
2.1
|
1.4
|
1.0
|
ND
|
B:CLA602
|
2.1
|
1.4
|
1.0
|
ND1
|
B:HIS201
|
2.4
|
1.5
|
1.0
|
C4D
|
B:CLA602
|
3.0
|
1.1
|
1.0
|
C4A
|
B:CLA602
|
3.0
|
1.4
|
1.0
|
C1B
|
B:CLA602
|
3.1
|
1.5
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
1.3
|
1.0
|
C4B
|
B:CLA602
|
3.1
|
1.8
|
1.0
|
C1A
|
B:CLA602
|
3.1
|
1.5
|
1.0
|
C4C
|
B:CLA602
|
3.2
|
1.2
|
1.0
|
CE1
|
B:HIS201
|
3.2
|
2.2
|
1.0
|
C1D
|
B:CLA602
|
3.2
|
0.9
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
1.5
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
2.0
|
1.0
|
CG
|
B:HIS201
|
3.5
|
1.6
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
1.0
|
1.0
|
CHD
|
B:CLA602
|
3.6
|
0.7
|
1.0
|
CZ
|
H:PHE41
|
3.7
|
2.2
|
1.0
|
CB
|
B:HIS201
|
3.8
|
1.2
|
1.0
|
CE2
|
H:PHE41
|
4.2
|
3.9
|
1.0
|
C3D
|
B:CLA602
|
4.3
|
1.0
|
1.0
|
C2B
|
B:CLA602
|
4.3
|
1.8
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
2.4
|
1.0
|
C2C
|
B:CLA602
|
4.4
|
2.7
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
2.2
|
1.0
|
NE2
|
B:HIS201
|
4.4
|
1.3
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
1.5
|
1.0
|
CA
|
B:HIS201
|
4.4
|
1.3
|
1.0
|
C2A
|
B:CLA602
|
4.4
|
1.6
|
1.0
|
C2D
|
B:CLA602
|
4.4
|
0.9
|
1.0
|
CD2
|
B:HIS201
|
4.5
|
1.0
|
1.0
|
CE1
|
H:PHE41
|
4.7
|
2.6
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
1.0
|
1.0
|
CMA
|
B:CLA602
|
5.0
|
3.9
|
1.0
|
CE1
|
B:PHE190
|
5.0
|
2.1
|
1.0
|
|
Magnesium binding site 6 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 6 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:0.9
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
0.9
|
1.0
|
NB
|
B:CLA603
|
2.0
|
0.5
|
1.0
|
ND
|
B:CLA603
|
2.0
|
0.8
|
1.0
|
NA
|
B:CLA603
|
2.1
|
0.6
|
1.0
|
NC
|
B:CLA603
|
2.1
|
0.8
|
1.0
|
NE2
|
B:HIS202
|
2.2
|
1.4
|
1.0
|
C4D
|
B:CLA603
|
3.0
|
0.8
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
0.5
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
0.6
|
1.0
|
C4B
|
B:CLA603
|
3.1
|
0.6
|
1.0
|
C1C
|
B:CLA603
|
3.1
|
0.8
|
1.0
|
CE1
|
B:HIS202
|
3.2
|
0.9
|
1.0
|
C1A
|
B:CLA603
|
3.2
|
0.6
|
1.0
|
C4C
|
B:CLA603
|
3.2
|
1.0
|
1.0
|
C1D
|
B:CLA603
|
3.2
|
0.7
|
1.0
|
CD2
|
B:HIS202
|
3.3
|
1.1
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
0.4
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
0.6
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
0.7
|
1.0
|
CHD
|
B:CLA603
|
3.6
|
0.7
|
1.0
|
C9
|
B:CLA605
|
4.0
|
1.6
|
1.0
|
C2B
|
B:CLA603
|
4.3
|
0.6
|
1.0
|
C3D
|
B:CLA603
|
4.3
|
0.9
|
1.0
|
ND1
|
B:HIS202
|
4.3
|
1.0
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
0.8
|
1.0
|
C6
|
B:CLA605
|
4.3
|
1.6
|
1.0
|
C2C
|
B:CLA603
|
4.3
|
1.2
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
1.2
|
1.0
|
CG
|
B:HIS202
|
4.4
|
0.9
|
1.0
|
C2D
|
B:CLA603
|
4.4
|
0.8
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
0.5
|
1.0
|
C2A
|
B:CLA603
|
4.4
|
0.7
|
1.0
|
C4
|
B:CLA605
|
4.6
|
1.1
|
1.0
|
C5
|
B:CLA605
|
4.7
|
1.2
|
1.0
|
C7
|
B:CLA605
|
4.8
|
2.8
|
1.0
|
CBA
|
B:CLA603
|
4.8
|
0.4
|
1.0
|
NE2
|
B:HIS201
|
4.8
|
1.3
|
1.0
|
CD2
|
B:HIS201
|
4.9
|
1.0
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
1.1
|
1.0
|
C8
|
B:CLA605
|
4.9
|
2.6
|
1.0
|
C3
|
B:CLA605
|
5.0
|
1.6
|
1.0
|
|
Magnesium binding site 7 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 7 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:0.0
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
0.0
|
1.0
|
NB
|
B:CLA604
|
2.0
|
0.0
|
1.0
|
ND
|
B:CLA604
|
2.0
|
0.1
|
1.0
|
NC
|
B:CLA604
|
2.1
|
0.0
|
1.0
|
NA
|
B:CLA604
|
2.1
|
0.0
|
1.0
|
NE2
|
B:HIS455
|
2.2
|
0.1
|
1.0
|
C4D
|
B:CLA604
|
3.0
|
0.1
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
0.0
|
1.0
|
C4B
|
B:CLA604
|
3.1
|
0.0
|
1.0
|
C4A
|
B:CLA604
|
3.1
|
0.1
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
0.0
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
0.1
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
0.0
|
1.0
|
CD2
|
B:HIS455
|
3.2
|
0.0
|
1.0
|
C1A
|
B:CLA604
|
3.2
|
0.1
|
1.0
|
CE1
|
B:HIS455
|
3.2
|
0.0
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
0.0
|
1.0
|
CHC
|
B:CLA604
|
3.5
|
0.0
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
0.1
|
1.0
|
CHD
|
B:CLA604
|
3.5
|
0.0
|
1.0
|
C14
|
B:CLA612
|
3.9
|
0.1
|
1.0
|
C3D
|
B:CLA604
|
4.3
|
0.1
|
1.0
|
C2B
|
B:CLA604
|
4.3
|
0.0
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
0.0
|
1.0
|
CG
|
B:HIS455
|
4.3
|
0.0
|
1.0
|
ND1
|
B:HIS455
|
4.3
|
0.0
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
0.1
|
1.0
|
C2C
|
B:CLA604
|
4.4
|
0.0
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
0.0
|
1.0
|
C3A
|
B:CLA604
|
4.5
|
0.1
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
0.2
|
1.0
|
C13
|
B:CLA612
|
4.6
|
0.5
|
1.0
|
C15
|
B:CLA612
|
4.8
|
0.3
|
1.0
|
CBD
|
B:CLA604
|
5.0
|
0.2
|
1.0
|
CE2
|
B:PHE451
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 8 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 8 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:0.5
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
0.5
|
1.0
|
NB
|
B:CLA605
|
2.0
|
0.5
|
1.0
|
ND
|
B:CLA605
|
2.1
|
0.5
|
1.0
|
NA
|
B:CLA605
|
2.1
|
0.4
|
1.0
|
NE2
|
B:HIS100
|
2.2
|
0.5
|
1.0
|
NC
|
B:CLA605
|
2.2
|
0.3
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
0.6
|
1.0
|
C4D
|
B:CLA605
|
3.0
|
0.2
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
0.5
|
1.0
|
C4A
|
B:CLA605
|
3.1
|
0.4
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
0.5
|
1.0
|
CE1
|
B:HIS100
|
3.1
|
0.4
|
1.0
|
CD2
|
B:HIS100
|
3.1
|
0.2
|
1.0
|
C1A
|
B:CLA605
|
3.2
|
0.4
|
1.0
|
C4C
|
B:CLA605
|
3.2
|
0.2
|
1.0
|
C1D
|
B:CLA605
|
3.2
|
0.2
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
0.5
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
0.4
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
0.4
|
1.0
|
CHD
|
B:CLA605
|
3.6
|
0.2
|
1.0
|
C2
|
B:CLA604
|
4.2
|
4.0
|
1.0
|
C2B
|
B:CLA605
|
4.2
|
1.0
|
1.0
|
C3B
|
B:CLA605
|
4.2
|
0.8
|
1.0
|
C1
|
B:CLA604
|
4.2
|
2.4
|
1.0
|
ND1
|
B:HIS100
|
4.2
|
0.3
|
1.0
|
CG
|
B:HIS100
|
4.3
|
0.2
|
1.0
|
C3D
|
B:CLA605
|
4.3
|
0.3
|
1.0
|
C2C
|
B:CLA605
|
4.4
|
0.2
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
0.2
|
1.0
|
C2D
|
B:CLA605
|
4.4
|
0.3
|
1.0
|
C3A
|
B:CLA605
|
4.5
|
0.5
|
1.0
|
C2A
|
B:CLA605
|
4.5
|
0.6
|
1.0
|
C3
|
B:CLA604
|
4.7
|
8.3
|
1.0
|
C4
|
B:CLA606
|
4.9
|
0.7
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
0.4
|
1.0
|
|
Magnesium binding site 9 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 9 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:2.0
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
2.0
|
1.0
|
NB
|
B:CLA606
|
2.0
|
2.0
|
1.0
|
ND
|
B:CLA606
|
2.0
|
4.7
|
1.0
|
NA
|
B:CLA606
|
2.1
|
2.8
|
1.0
|
NC
|
B:CLA606
|
2.2
|
2.8
|
1.0
|
ND1
|
B:HIS157
|
2.5
|
4.8
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
3.2
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
1.7
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
3.3
|
1.0
|
C4B
|
B:CLA606
|
3.1
|
2.6
|
1.0
|
C1A
|
B:CLA606
|
3.1
|
2.1
|
1.0
|
CE1
|
B:HIS157
|
3.1
|
3.6
|
1.0
|
C1D
|
B:CLA606
|
3.2
|
4.3
|
1.0
|
C1C
|
B:CLA606
|
3.2
|
2.3
|
1.0
|
C4C
|
B:CLA606
|
3.2
|
2.9
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
1.5
|
1.0
|
CHA
|
B:CLA606
|
3.4
|
3.1
|
1.0
|
C5
|
B:LMT623
|
3.4
|
4.8
|
1.0
|
CHC
|
B:CLA606
|
3.5
|
1.5
|
1.0
|
CHD
|
B:CLA606
|
3.6
|
2.8
|
1.0
|
CG
|
B:HIS157
|
3.6
|
2.5
|
1.0
|
CB
|
B:HIS157
|
4.1
|
2.4
|
1.0
|
C7
|
B:LMT623
|
4.2
|
4.2
|
1.0
|
C3D
|
B:CLA606
|
4.2
|
3.7
|
1.0
|
C6
|
B:LMT623
|
4.3
|
3.9
|
1.0
|
C2B
|
B:CLA606
|
4.3
|
1.3
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
2.1
|
1.0
|
C2D
|
B:CLA606
|
4.4
|
4.0
|
1.0
|
NE2
|
B:HIS157
|
4.4
|
3.2
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
1.9
|
1.0
|
C2C
|
B:CLA606
|
4.4
|
1.8
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
3.0
|
1.0
|
C2A
|
B:CLA606
|
4.4
|
4.1
|
1.0
|
C4
|
B:LMT623
|
4.6
|
8.2
|
1.0
|
CD2
|
B:HIS157
|
4.6
|
3.0
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
3.9
|
1.0
|
CD
|
B:PRO164
|
5.0
|
4.7
|
1.0
|
|
Magnesium binding site 10 out
of 70 in 9eh5
Go back to
Magnesium Binding Sites List in 9eh5
Magnesium binding site 10 out
of 70 in the Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:1.7
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
1.7
|
1.0
|
ND
|
B:CLA607
|
2.0
|
1.0
|
1.0
|
O
|
B:HOH798
|
2.1
|
0.0
|
1.0
|
NB
|
B:CLA607
|
2.1
|
1.1
|
1.0
|
NA
|
B:CLA607
|
2.1
|
1.0
|
1.0
|
NC
|
B:CLA607
|
2.1
|
0.6
|
1.0
|
C4D
|
B:CLA607
|
2.9
|
1.4
|
1.0
|
C4A
|
B:CLA607
|
3.1
|
1.0
|
1.0
|
C1B
|
B:CLA607
|
3.1
|
0.7
|
1.0
|
C4B
|
B:CLA607
|
3.1
|
0.7
|
1.0
|
C1C
|
B:CLA607
|
3.1
|
0.6
|
1.0
|
C1A
|
B:CLA607
|
3.2
|
1.4
|
1.0
|
C1D
|
B:CLA607
|
3.2
|
1.8
|
1.0
|
C4C
|
B:CLA607
|
3.2
|
1.0
|
1.0
|
CHB
|
B:CLA607
|
3.5
|
0.9
|
1.0
|
CHC
|
B:CLA607
|
3.5
|
0.4
|
1.0
|
CHA
|
B:CLA607
|
3.5
|
1.6
|
1.0
|
CHD
|
B:CLA607
|
3.5
|
0.9
|
1.0
|
C12
|
B:LMG621
|
3.7
|
2.6
|
1.0
|
C14
|
B:LMG621
|
4.1
|
3.4
|
1.0
|
C3D
|
B:CLA607
|
4.3
|
1.9
|
1.0
|
O
|
B:HOH767
|
4.3
|
3.1
|
1.0
|
SD
|
B:MET37
|
4.4
|
6.5
|
1.0
|
C2B
|
B:CLA607
|
4.4
|
0.5
|
1.0
|
C2D
|
B:CLA607
|
4.4
|
1.6
|
1.0
|
C3B
|
B:CLA607
|
4.4
|
0.6
|
1.0
|
C2C
|
B:CLA607
|
4.4
|
0.5
|
1.0
|
C3C
|
B:CLA607
|
4.4
|
0.6
|
1.0
|
C3A
|
B:CLA607
|
4.4
|
0.9
|
1.0
|
CD2
|
B:PHE61
|
4.5
|
0.7
|
1.0
|
C2A
|
B:CLA607
|
4.5
|
1.4
|
1.0
|
C13
|
B:LMG621
|
4.5
|
3.2
|
1.0
|
CE
|
B:MET37
|
4.7
|
1.9
|
1.0
|
CB
|
B:PHE61
|
4.7
|
0.9
|
1.0
|
CG
|
B:PHE61
|
4.8
|
0.8
|
1.0
|
C11
|
B:LMG621
|
4.9
|
2.4
|
1.0
|
CBD
|
B:CLA607
|
4.9
|
2.4
|
1.0
|
O9
|
B:LMG621
|
4.9
|
4.7
|
1.0
|
|
Reference:
D.A.Flesher,
J.Shin,
R.J.Debus,
G.W.Brudvig.
Structure of A Mutated Photosystem II Complex Reveals Changes to the Hydrogen-Bonding Network That Affect Proton Egress During O-O Bond Formation. J.Biol.Chem. 08272 2025.
ISSN: ESSN 1083-351X
PubMed: 39922494
DOI: 10.1016/J.JBC.2025.108272
Page generated: Tue Feb 25 11:17:38 2025
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