Magnesium in PDB 9ezy: Vibrio Cholerae Ddmd-Ddme Holo Complex

The binding sites of Magnesium atom in the Vibrio Cholerae Ddmd-Ddme Holo Complex (pdb code 9ezy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Vibrio Cholerae Ddmd-Ddme Holo Complex, PDB code: 9ezy:

Magnesium binding site 1 out of 1 in the Vibrio Cholerae Ddmd-Ddme Holo Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Vibrio Cholerae Ddmd-Ddme Holo Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:42.6 occ:1.00 OP1 C:DA4 1.9 48.0 1.0 O3' C:DA1 2.5 62.1 1.0 P C:DA4 3.3 47.2 1.0 P C:DT2 3.9 64.0 1.0 O5' C:DA4 4.0 46.0 1.0 NZ B:LYS405 4.0 81.8 1.0 OE2 B:GLU678 4.0 94.9 1.0 O5' C:DT2 4.1 58.2 1.0 OP2 C:DA4 4.2 43.7 1.0 OE1 B:GLU401 4.3 86.7 1.0 C5' C:DA4 4.3 38.8 1.0 C5' C:DT2 4.3 62.4 1.0 O3' C:DA3 4.4 41.5 1.0 OE1 B:GLN376 4.4 106.3 1.0 NE2 B:GLN376 4.6 105.0 1.0 OP2 C:DT2 4.6 61.1 1.0 OP1 C:DT2 4.8 64.9 1.0 CD B:GLN376 5.0 107.1 1.0 CD B:GLU678 5.0 88.7 1.0

L.Loeff, D.W.Adams, C.Chanez, S.Stutzmann, L.Righi, M.Blokesch, M.Jinek. Molecular Mechanism of Plasmid Elimination By the Ddmde Defense System. Science V. 385 188 2024.
ISSN: ESSN 1095-9203
PubMed: 38870273
DOI: 10.1126/SCIENCE.ADQ0534