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Magnesium in PDB 9f0z: Cryoem Structure of the F Plasmid Relaxosome with Truncated TRAI1-863 in Its Te Mode, Derived From the Ss-27_+8DS+9_+143-R_DELTAAH+Ctd Locally-Refined 3.42 A Map

Enzymatic activity of Cryoem Structure of the F Plasmid Relaxosome with Truncated TRAI1-863 in Its Te Mode, Derived From the Ss-27_+8DS+9_+143-R_DELTAAH+Ctd Locally-Refined 3.42 A Map

All present enzymatic activity of Cryoem Structure of the F Plasmid Relaxosome with Truncated TRAI1-863 in Its Te Mode, Derived From the Ss-27_+8DS+9_+143-R_DELTAAH+Ctd Locally-Refined 3.42 A Map:
3.6.4.12; 5.6.2.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of the F Plasmid Relaxosome with Truncated TRAI1-863 in Its Te Mode, Derived From the Ss-27_+8DS+9_+143-R_DELTAAH+Ctd Locally-Refined 3.42 A Map (pdb code 9f0z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of the F Plasmid Relaxosome with Truncated TRAI1-863 in Its Te Mode, Derived From the Ss-27_+8DS+9_+143-R_DELTAAH+Ctd Locally-Refined 3.42 A Map, PDB code: 9f0z:

Magnesium binding site 1 out of 1 in 9f0z

Go back to Magnesium Binding Sites List in 9f0z
Magnesium binding site 1 out of 1 in the Cryoem Structure of the F Plasmid Relaxosome with Truncated TRAI1-863 in Its Te Mode, Derived From the Ss-27_+8DS+9_+143-R_DELTAAH+Ctd Locally-Refined 3.42 A Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the F Plasmid Relaxosome with Truncated TRAI1-863 in Its Te Mode, Derived From the Ss-27_+8DS+9_+143-R_DELTAAH+Ctd Locally-Refined 3.42 A Map within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg900

b:103.2
occ:1.00
OP1 A:DG-1 1.9 115.3 1.0
ND1 H:HIS146 2.0 110.0 1.0
NE2 H:HIS159 2.0 119.8 1.0
NE2 H:HIS157 2.1 114.5 1.0
CD2 H:HIS159 2.6 116.2 1.0
CE1 H:HIS146 2.7 114.4 1.0
O3' A:DT1 2.7 121.1 1.0
P A:DG-1 2.8 121.2 1.0
CD2 H:HIS157 3.0 114.4 1.0
CG H:HIS146 3.1 111.1 1.0
CE1 H:HIS157 3.1 116.7 1.0
CE1 H:HIS159 3.2 123.3 1.0
O5' A:DG-1 3.4 130.2 1.0
CB H:HIS146 3.7 110.6 1.0
CG H:HIS159 3.8 116.3 1.0
NE2 H:HIS146 3.9 114.0 1.0
ND1 H:HIS159 4.0 121.6 1.0
CD2 H:HIS146 4.1 112.2 1.0
C3' A:DT1 4.1 128.8 1.0
OP2 A:DG-1 4.2 129.1 1.0
CG H:HIS157 4.2 114.7 1.0
ND1 H:HIS157 4.2 115.1 1.0
C2' A:DT1 4.7 134.4 1.0
C4' A:DT1 4.8 129.9 1.0
C5' A:DG-1 4.8 134.8 1.0

Reference:

S.M.Williams, S.Raffl, S.Kienesberger, A.Ilangovan, E.L.Zechner, G.Waksman. Cryo-Em Structure of the Relaxosome, A Complex Essential For Bacterial Mating and the Spread of Antibiotic Resistance Genes. Nat Commun V. 16 4906 2025.
ISSN: ESSN 2041-1723
PubMed: 40425557
DOI: 10.1038/S41467-025-60116-6
Page generated: Sat Aug 16 01:37:32 2025

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