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Magnesium in PDB 9f12: Cryoem Structure of the F Plasmid Relaxosome with Orit Dna Ss-27_-3DS- 2_+143 and Trai Its Te Mode, Derived From Ss-27_-3DS-2_+143-R Locally-Refined 3.42 A Map.

Enzymatic activity of Cryoem Structure of the F Plasmid Relaxosome with Orit Dna Ss-27_-3DS- 2_+143 and Trai Its Te Mode, Derived From Ss-27_-3DS-2_+143-R Locally-Refined 3.42 A Map.

All present enzymatic activity of Cryoem Structure of the F Plasmid Relaxosome with Orit Dna Ss-27_-3DS- 2_+143 and Trai Its Te Mode, Derived From Ss-27_-3DS-2_+143-R Locally-Refined 3.42 A Map.:
3.6.4.12; 5.6.2.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of the F Plasmid Relaxosome with Orit Dna Ss-27_-3DS- 2_+143 and Trai Its Te Mode, Derived From Ss-27_-3DS-2_+143-R Locally-Refined 3.42 A Map. (pdb code 9f12). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of the F Plasmid Relaxosome with Orit Dna Ss-27_-3DS- 2_+143 and Trai Its Te Mode, Derived From Ss-27_-3DS-2_+143-R Locally-Refined 3.42 A Map., PDB code: 9f12:

Magnesium binding site 1 out of 1 in 9f12

Go back to Magnesium Binding Sites List in 9f12
Magnesium binding site 1 out of 1 in the Cryoem Structure of the F Plasmid Relaxosome with Orit Dna Ss-27_-3DS- 2_+143 and Trai Its Te Mode, Derived From Ss-27_-3DS-2_+143-R Locally-Refined 3.42 A Map.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the F Plasmid Relaxosome with Orit Dna Ss-27_-3DS- 2_+143 and Trai Its Te Mode, Derived From Ss-27_-3DS-2_+143-R Locally-Refined 3.42 A Map. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg1801

b:53.3
occ:1.00
NE2 H:HIS157 1.9 60.9 1.0
ND1 H:HIS146 2.0 69.6 1.0
NE2 H:HIS159 2.2 74.2 1.0
OP1 A:DG-1 2.5 94.3 1.0
CD2 H:HIS157 2.8 68.2 1.0
O3' A:DT1 2.8 81.1 1.0
CE1 H:HIS146 2.9 73.1 1.0
CG H:HIS146 3.0 70.0 1.0
CD2 H:HIS159 3.0 68.3 1.0
CE1 H:HIS157 3.1 68.6 1.0
P A:DG-1 3.2 92.0 1.0
CE1 H:HIS159 3.3 73.7 1.0
CB H:HIS146 3.3 69.3 1.0
O5' A:DG-1 3.9 86.7 1.0
CG H:HIS157 4.0 69.6 1.0
NE2 H:HIS146 4.0 76.8 1.0
CD2 H:HIS146 4.1 69.6 1.0
ND1 H:HIS157 4.1 72.4 1.0
C3' A:DT1 4.1 80.8 1.0
CG H:HIS159 4.2 62.5 1.0
ND1 H:HIS159 4.3 64.1 1.0
C4' A:DT1 4.4 85.3 1.0
OP2 A:DG-1 4.6 94.7 1.0
CA H:HIS146 4.8 65.8 1.0
C2' A:DT1 4.9 79.5 1.0
O H:HIS157 4.9 73.6 1.0

Reference:

S.M.Williams, S.Raffl, S.Kienesberger, A.Ilangovan, E.L.Zechner, G.Waksman. Cryo-Em Structure of the Relaxosome, A Complex Essential For Bacterial Mating and the Spread of Antibiotic Resistance Genes. Nat Commun V. 16 4906 2025.
ISSN: ESSN 2041-1723
PubMed: 40425557
DOI: 10.1038/S41467-025-60116-6
Page generated: Sat Aug 16 01:37:52 2025

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