Magnesium in PDB 9fd2: Structure of Pol II-Tc-Ner-STK19 Complex

All present enzymatic activity of Structure of Pol II-Tc-Ner-STK19 Complex:
2.7.7.6;

The structure of Structure of Pol II-Tc-Ner-STK19 Complex also contains other interesting chemical elements:

Zinc

(Zn)

10 atoms

The binding sites of Magnesium atom in the Structure of Pol II-Tc-Ner-STK19 Complex (pdb code 9fd2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Pol II-Tc-Ner-STK19 Complex, PDB code: 9fd2:

Magnesium binding site 1 out of 1 in the Structure of Pol II-Tc-Ner-STK19 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Pol II-Tc-Ner-STK19 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2003 b:60.7 occ:1.00 OD1 A:ASP495 1.9 59.3 1.0 O3' M:A10 2.0 60.3 1.0 OD1 A:ASP497 2.0 58.6 1.0 OD1 A:ASP499 2.0 60.4 1.0 CG A:ASP499 2.7 60.4 1.0 OD2 A:ASP499 2.7 60.4 1.0 CG A:ASP495 2.9 59.3 1.0 CG A:ASP497 3.0 58.6 1.0 C3' M:A10 3.2 60.3 1.0 OD2 A:ASP495 3.3 59.3 1.0 OD2 A:ASP497 3.4 58.6 1.0 C4' M:A10 3.6 60.3 1.0 O2' M:A10 3.7 60.3 1.0 C2' M:A10 4.0 60.3 1.0 CB A:ASP499 4.1 60.4 1.0 CB A:ASP495 4.2 59.3 1.0 N A:ASP497 4.2 58.6 1.0 C5' M:A10 4.2 60.3 1.0 CB A:ASP497 4.3 58.6 1.0 O A:ASP497 4.4 58.6 1.0 C A:ASP495 4.4 59.3 1.0 O A:ASP495 4.5 59.3 1.0 C A:ASP497 4.5 58.6 1.0 N A:ASP499 4.5 60.4 1.0 CA A:ASP497 4.5 58.6 1.0 N A:ASP495 4.6 59.3 1.0 CA A:ASP495 4.6 59.3 1.0 CA A:ASP499 4.7 60.4 1.0 N A:PHE496 4.8 57.3 1.0 O4' M:A10 4.9 60.3 1.0

S.-H.Lee, T.K.Sixma. Structure of Pol II-Tc-Ner-STK19 Complex Mol.Cell 2024.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2024.10.030