Magnesium in PDB 9guq: 30S Pic (Pre-Initiation Complex)

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 128;

Binding sites:

The binding sites of Magnesium atom in the 30S Pic (Pre-Initiation Complex) (pdb code 9guq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 128 binding sites of Magnesium where determined in the 30S Pic (Pre-Initiation Complex), PDB code: 9guq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:80.2 occ:1.00 OP2 A:G953 3.9 101.3 1.0 OP1 A:U952 3.9 100.4 1.0 OP1 A:G953 4.3 100.7 1.0 P A:G953 4.5 103.6 1.0 O6 A:G963 4.6 99.0 1.0 O3' A:U952 4.8 98.4 1.0 N4 A:C962 4.9 96.2 1.0 N7 A:G963 4.9 89.9 1.0 P A:U952 4.9 98.4 1.0 N6 A:A964 5.0 98.8 1.0 O5' A:U952 5.0 94.5 1.0

Magnesium binding site 2 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:72.8 occ:1.00 OP2 A:A1110 1.9 94.0 1.0 P A:A1110 3.3 104.9 1.0 O2 A:U1189 3.8 99.1 1.0 O5' A:A1110 3.8 96.0 1.0 OP1 A:C1109 4.2 97.6 1.0 OP1 A:A1110 4.3 107.1 1.0 OP2 A:C1109 4.3 94.6 1.0 O3' A:C1109 4.4 94.8 1.0 OP2 A:A1111 4.4 112.4 1.0 N7 A:A1111 4.5 92.4 1.0 O5' A:C1109 4.5 86.9 1.0 P A:C1109 4.5 96.6 1.0 N7 A:A1110 4.6 90.8 1.0 C3' A:C1109 4.6 87.7 1.0 C8 A:A1110 4.6 87.8 1.0 C2 A:U1189 4.9 94.6 1.0

Magnesium binding site 3 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:77.6 occ:1.00 O O:ALA2 4.1 111.4 1.0 OP1 A:A1204 4.2 113.2 1.0 OP2 A:A1204 4.2 115.1 1.0 OP1 A:G1048 4.4 103.8 1.0 OP2 A:G1048 4.5 104.7 1.0 NE2 O:GLN4 4.6 106.7 1.0 OP1 A:U1049 4.6 110.5 1.0 OP1 A:C1203 4.7 107.9 1.0 P A:A1204 4.7 124.5 1.0 P A:G1048 5.0 102.7 1.0

Magnesium binding site 4 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:90.1 occ:1.00 N7 A:G1353 4.0 84.4 1.0 O6 A:G1353 4.4 92.9 1.0 O4 A:U1354 4.8 93.9 1.0 C5 A:G1353 4.8 82.6 1.0 C8 A:G1353 4.9 88.3 1.0 C6 A:G1353 5.0 85.7 1.0

Magnesium binding site 5 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:64.3 occ:1.00 O6 A:G1370 2.0 92.2 1.0 C6 A:G1370 2.9 87.8 1.0 N7 A:G1370 3.4 88.4 1.0 C5 A:G1370 3.5 83.0 1.0 N4 A:C1352 4.0 85.2 1.0 N1 A:G1370 4.1 88.4 1.0 O6 A:G1371 4.2 92.5 1.0 O4 A:U1351 4.4 96.5 1.0 N7 A:G1371 4.7 74.8 1.0 C8 A:G1370 4.7 84.1 1.0 N4 A:C1369 4.7 84.7 1.0 C4 A:G1370 4.8 77.8 1.0

Magnesium binding site 6 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:77.5 occ:1.00 OP1 A:G944 2.1 99.0 1.0 OP2 A:G945 2.5 106.2 1.0 P A:G944 3.3 113.0 1.0 OP2 A:G944 3.8 100.4 1.0 P A:G945 3.8 111.2 1.0 O5' A:G944 4.0 102.0 1.0 C5' A:G944 4.3 95.7 1.0 O5' A:G945 4.5 102.0 1.0 OP1 A:G945 4.5 112.3 1.0 N7 A:A946 4.5 89.1 1.0 OP2 A:A946 4.6 104.4 1.0 O3' A:U943 4.6 99.1 1.0 O6 A:G947 4.8 102.1 1.0 O6 A:G1233 4.9 96.7 1.0 O3' A:G944 5.0 95.6 1.0

Magnesium binding site 7 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:67.6 occ:1.00 N3 A:C980 4.1 88.5 1.0 O3' A:C1359 4.2 100.8 1.0 OP1 A:A1360 4.2 104.6 1.0 O6 A:G1361 4.3 97.6 1.0 N7 A:A1360 4.3 87.0 1.0 O O:SER58 4.5 95.0 1.0 O2 A:C980 4.5 95.2 1.0 C8 A:A1360 4.7 91.0 1.0 C2 A:C980 4.8 87.0 1.0 O O:GLN60 4.8 99.7 1.0 N4 A:C980 4.9 89.3 1.0 P A:A1360 4.9 111.7 1.0 N4 A:C979 4.9 91.4 1.0 C4 A:C980 5.0 87.2 1.0

Magnesium binding site 8 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:73.0 occ:1.00 N2 A:G1279 3.1 124.2 1.0 OP2 A:A1254 3.9 104.5 1.0 C2 A:G1279 4.0 116.6 1.0 N7 A:A1254 4.2 96.1 1.0 N1 A:G1279 4.6 115.1 1.0 N3 A:G1279 4.7 106.6 1.0 C8 A:A1254 4.7 96.6 1.0 N7 A:G1255 4.8 104.3 1.0 NE K:ARG45 4.9 119.5 1.0 CG K:ARG45 5.0 99.1 1.0

Magnesium binding site 9 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:118.2 occ:1.00 O5' A:A1238 1.9 116.7 1.0 OP2 A:A1238 1.9 120.7 1.0 P A:A1238 2.4 116.8 1.0 C5' A:A1238 3.0 114.7 1.0 O3' A:C1237 3.4 105.4 1.0 OP1 A:A1238 3.5 108.4 1.0 O2 A:U1335 4.0 108.5 1.0 O2' A:U1335 4.1 122.7 1.0 C4' A:A1238 4.2 107.8 1.0 O4' A:A1238 4.3 100.5 1.0 O4 A:U1301 4.4 111.5 1.0 C8 A:A1238 4.7 100.5 1.0 C2 A:A1299 4.7 123.2 1.0 C3' A:C1237 4.8 95.1 1.0 N2 A:G1300 4.9 107.0 1.0 C1' A:U1335 5.0 111.5 1.0

Magnesium binding site 10 out of 128 in the 30S Pic (Pre-Initiation Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 30S Pic (Pre-Initiation Complex) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:80.5 occ:1.00 OP2 A:U1052 4.0 117.7 1.0 OP1 A:C1200 4.1 104.9 1.0 O2' A:C962 4.3 98.2 1.0 OP2 A:C1051 4.4 126.5 1.0 OP1 A:C1051 4.4 131.4 1.0 C5' A:G963 4.4 101.5 1.0 C4' A:G963 4.7 97.4 1.0 P A:C1051 4.8 132.9 1.0 P A:C1200 4.9 105.2 1.0 OP2 A:C1200 4.9 100.0 1.0

M.W.Webster, A.Chauvier, H.Rahil, A.Graziadei, N.Miropolskaya, K.Charles, M.Takacs, C.Saintandre, J.Rappsilber, N.G.Walter, A.Weixlbaumer. Molecular Basis of Mrna Delivery to the Bacterial Ribosome Science 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADO8476