Magnesium in PDB 9hjc: Cryo-Em Structure of Thiamine-Bound Human TPK1

The binding sites of Magnesium atom in the Cryo-Em Structure of Thiamine-Bound Human TPK1 (pdb code 9hjc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Thiamine-Bound Human TPK1, PDB code: 9hjc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Thiamine-Bound Human TPK1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Thiamine-Bound Human TPK1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:33.9 occ:1.00 OD2 A:ASP46 2.5 32.4 1.0 OD2 A:ASP100 2.6 36.5 1.0 OD1 A:ASP73 2.7 37.9 1.0 OD1 A:ASP100 2.9 33.9 1.0 HB2 A:ASP71 3.0 35.6 1.0 CG A:ASP100 3.1 31.1 1.0 H A:ASP71 3.2 34.6 1.0 CG A:ASP46 3.4 31.5 1.0 CG A:ASP73 3.4 35.2 1.0 H A:ASP73 3.4 33.1 1.0 OD2 A:ASP73 3.6 35.6 1.0 HB3 A:ASP46 3.6 29.5 1.0 HB2 A:ASP46 3.7 30.3 1.0 CB A:ASP46 3.8 30.8 1.0 OG A:SER74 3.8 29.6 1.0 H A:SER74 3.9 31.7 1.0 H A:PHE72 3.9 33.7 1.0 CB A:ASP71 3.9 36.7 1.0 N A:ASP71 3.9 34.4 1.0 OD2 A:ASP71 4.1 38.5 1.0 N A:ASP73 4.3 32.4 1.0 HG A:SER74 4.3 30.9 1.0 OD1 A:ASP46 4.3 32.3 1.0 CG A:ASP71 4.3 38.1 1.0 N A:PHE72 4.4 34.7 1.0 CA A:ASP71 4.4 35.3 1.0 O1 B:VIB301 4.4 31.4 1.0 HA3 A:GLY70 4.5 31.9 1.0 HO1 B:VIB301 4.5 30.0 1.0 CB A:ASP100 4.5 27.1 1.0 N A:SER74 4.5 31.3 1.0 CB A:ASP73 4.6 30.8 1.0 HB2 A:SER74 4.6 30.3 1.0 HB3 A:ASP71 4.6 36.7 1.0 C A:ASP71 4.7 35.0 1.0 HB3 A:ASP73 4.8 33.1 1.0 CB A:SER74 4.8 30.1 1.0 HB3 A:ASP100 4.8 28.8 1.0 HB2 A:ASP100 4.8 28.0 1.0 CA A:ASP73 4.9 31.4 1.0 H A:GLY47 4.9 26.9 1.0 C A:GLY70 5.0 35.4 1.0 HZ3 A:LYS103 5.0 32.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Thiamine-Bound Human TPK1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Thiamine-Bound Human TPK1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:30.8 occ:1.00 OD2 B:ASP46 2.6 33.4 1.0 OD1 B:ASP71 2.6 37.9 1.0 OD2 B:ASP100 2.7 36.2 1.0 OD1 B:ASP73 2.7 38.0 1.0 H B:ASP73 3.1 33.9 1.0 CG B:ASP73 3.2 36.5 1.0 CG B:ASP71 3.3 36.5 1.0 OD2 B:ASP73 3.3 37.3 1.0 OD2 B:ASP71 3.4 37.4 1.0 CG B:ASP100 3.5 31.8 1.0 H B:ASP71 3.5 33.9 1.0 OD1 B:ASP100 3.5 33.9 1.0 CG B:ASP46 3.6 31.9 1.0 HG B:SER74 3.6 31.2 1.0 OG B:SER74 3.7 29.6 1.0 H B:SER74 3.8 32.1 1.0 HB3 B:ASP46 3.9 29.9 1.0 H B:PHE72 3.9 33.9 1.0 N B:ASP73 4.0 33.4 1.0 HB2 B:ASP46 4.1 31.1 1.0 CB B:ASP46 4.1 31.1 1.0 HB2 B:SER74 4.2 30.3 1.0 N B:SER74 4.3 31.7 1.0 CB B:ASP73 4.3 32.6 1.0 N B:ASP71 4.3 33.2 1.0 N B:PHE72 4.3 34.9 1.0 HC71 A:VIB301 4.4 30.5 1.0 HB3 B:ASP73 4.4 34.4 1.0 CB B:SER74 4.5 30.0 1.0 CA B:ASP73 4.5 31.9 1.0 CB B:ASP71 4.6 35.7 1.0 OD1 B:ASP46 4.7 32.5 1.0 C B:ASP73 4.7 33.5 1.0 HA3 B:GLY70 4.7 31.8 1.0 CA B:ASP71 4.8 35.0 1.0 C B:ASP71 4.8 34.8 1.0 CB B:ASP100 4.9 27.9 1.0 HA B:PHE72 4.9 33.5 1.0 HB2 B:ASP100 5.0 28.5 1.0

F.Gabriel, F.Gabriel, C.Loew. N/A N/A.