Magnesium in PDB 9hm9: Structure of the Optimized F-Tractin in Complex with F-Actin

All present enzymatic activity of Structure of the Optimized F-Tractin in Complex with F-Actin:
2.7.1.127;

The binding sites of Magnesium atom in the Structure of the Optimized F-Tractin in Complex with F-Actin (pdb code 9hm9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Structure of the Optimized F-Tractin in Complex with F-Actin, PDB code: 9hm9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Structure of the Optimized F-Tractin in Complex with F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Optimized F-Tractin in Complex with F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:85.6 occ:1.00 O1B C:ADP401 2.1 96.3 1.0 PB C:ADP401 2.6 95.8 1.0 O2B C:ADP401 2.6 87.6 1.0 NE2 C:GLN137 2.7 87.9 1.0 O3B C:ADP401 3.3 91.9 1.0 CD C:GLN137 3.5 89.9 1.0 OE1 C:GLN137 3.7 98.5 1.0 OD2 C:ASP11 3.7 81.5 1.0 O3A C:ADP401 4.1 78.9 1.0 O1A C:ADP401 4.2 85.3 1.0 OD1 C:ASP11 4.2 82.0 1.0 CA C:GLY13 4.2 86.0 1.0 NZ C:LYS18 4.3 80.5 1.0 CG C:ASP11 4.4 80.0 1.0 OD2 C:ASP154 4.4 94.4 1.0 CG2 C:VAL339 4.6 71.2 1.0 CG C:GLN137 4.6 79.8 1.0 OD1 C:ASP154 4.7 89.6 1.0 PA C:ADP401 4.7 75.9 1.0 CB C:VAL339 4.8 70.7 1.0 CG1 C:VAL339 4.9 72.4 1.0 CE C:LYS18 4.9 75.0 1.0 N C:GLY13 5.0 83.7 1.0

Magnesium binding site 2 out of 5 in the Structure of the Optimized F-Tractin in Complex with F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Optimized F-Tractin in Complex with F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:106.8 occ:1.00 O1B A:ADP401 2.0 122.8 1.0 PB A:ADP401 2.8 130.6 1.0 O2B A:ADP401 2.8 125.8 1.0 NE2 A:GLN137 3.2 120.8 1.0 O3B A:ADP401 3.6 127.4 1.0 CD A:GLN137 3.7 119.5 1.0 OE1 A:GLN137 3.9 123.4 1.0 O1A A:ADP401 3.9 121.5 1.0 OD2 A:ASP11 3.9 125.8 1.0 OD1 A:ASP154 3.9 111.0 1.0 OD2 A:ASP154 4.0 112.8 1.0 O3A A:ADP401 4.1 120.6 1.0 CG2 A:VAL339 4.2 103.1 1.0 CG A:ASP154 4.3 110.4 1.0 CB A:VAL339 4.5 101.7 1.0 NZ A:LYS18 4.6 123.4 1.0 PA A:ADP401 4.6 120.0 1.0 OD1 A:ASP11 4.6 125.3 1.0 CG1 A:VAL339 4.7 104.0 1.0 CG A:ASP11 4.7 125.1 1.0 CG A:GLN137 4.8 110.4 1.0 CA A:GLY156 4.9 112.6 1.0

Magnesium binding site 3 out of 5 in the Structure of the Optimized F-Tractin in Complex with F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Optimized F-Tractin in Complex with F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:76.7 occ:1.00 O1B E:ADP401 2.1 95.7 1.0 PB E:ADP401 2.9 101.0 1.0 O2B E:ADP401 2.9 89.3 1.0 NE2 E:GLN137 3.3 90.0 1.0 O3B E:ADP401 3.7 94.5 1.0 CD E:GLN137 3.9 93.0 1.0 O1A E:ADP401 3.9 87.8 1.0 OD1 E:ASP154 3.9 88.4 1.0 OD2 E:ASP154 4.0 94.4 1.0 OD2 E:ASP11 4.1 80.7 1.0 OE1 E:GLN137 4.1 101.6 1.0 O3A E:ADP401 4.2 85.6 1.0 CG2 E:VAL339 4.2 73.0 1.0 CG E:ASP154 4.4 89.5 1.0 CB E:VAL339 4.6 68.7 1.0 NZ E:LYS18 4.7 82.3 1.0 OD1 E:ASP11 4.7 87.0 1.0 PA E:ADP401 4.7 83.1 1.0 CG1 E:VAL339 4.8 70.6 1.0 CG E:ASP11 4.8 81.7 1.0 CA E:GLY156 4.9 86.8 1.0 CG E:GLN137 4.9 83.5 1.0 CA E:GLY13 4.9 86.9 1.0

Magnesium binding site 4 out of 5 in the Structure of the Optimized F-Tractin in Complex with F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Optimized F-Tractin in Complex with F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:92.3 occ:1.00 O1B B:ADP401 2.1 103.8 1.0 PB B:ADP401 2.5 104.6 1.0 O2B B:ADP401 2.6 100.0 1.0 NE2 B:GLN137 2.7 95.6 1.0 O3B B:ADP401 3.1 97.7 1.0 CD B:GLN137 3.4 95.3 1.0 OE1 B:GLN137 3.7 102.5 1.0 OD2 B:ASP11 3.7 95.1 1.0 O3A B:ADP401 4.0 90.1 1.0 OD1 B:ASP11 4.2 94.6 1.0 CA B:GLY13 4.2 93.9 1.0 O1A B:ADP401 4.3 97.3 1.0 CG B:ASP11 4.4 93.5 1.0 OD2 B:ASP154 4.4 97.8 1.0 NZ B:LYS18 4.4 95.7 1.0 CG B:GLN137 4.6 84.7 1.0 OD1 B:ASP154 4.8 91.5 1.0 PA B:ADP401 4.8 88.5 1.0 CG2 B:VAL339 4.9 80.0 1.0 N B:GLY13 5.0 92.0 1.0 CA B:GLY156 5.0 90.5 1.0

Magnesium binding site 5 out of 5 in the Structure of the Optimized F-Tractin in Complex with F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the Optimized F-Tractin in Complex with F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:78.0 occ:1.00 O1B D:ADP401 2.0 95.7 1.0 NE2 D:GLN137 2.8 90.0 1.0 PB D:ADP401 3.0 99.2 1.0 OE1 D:GLN137 3.2 99.6 1.0 CD D:GLN137 3.2 90.5 1.0 O2B D:ADP401 3.3 91.7 1.0 OD2 D:ASP154 3.5 94.6 1.0 O3B D:ADP401 3.6 92.4 1.0 OD1 D:ASP154 3.9 90.4 1.0 CG D:ASP154 4.1 89.7 1.0 O1A D:ADP401 4.3 87.4 1.0 O3A D:ADP401 4.4 85.0 1.0 CG D:GLN137 4.4 78.5 1.0 OD2 D:ASP11 4.5 81.8 1.0 CG2 D:VAL339 4.5 70.7 1.0 CA D:GLY156 4.6 86.0 1.0 CB D:GLN137 4.8 77.3 1.0 OD1 D:ASP11 4.8 82.4 1.0 CA D:GLY13 4.8 87.1 1.0 CB D:VAL339 4.9 68.1 1.0 CG1 D:VAL339 5.0 68.3 1.0

D.Shatskiy, A.Sivan, R.Wedlich-Soeldner, A.Belyy. Structure of the F-Tractin-F-Actin Complex To Be Published.