Magnesium in PDB 9i2q: Wzc-K540M-3YE Mgadp C1

The binding sites of Magnesium atom in the Wzc-K540M-3YE Mgadp C1 (pdb code 9i2q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Wzc-K540M-3YE Mgadp C1, PDB code: 9i2q:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1001 b:62.3 occ:1.00 O1B D:ADP1000 2.0 62.5 1.0 OG1 D:THR541 2.3 55.5 1.0 OD2 D:ASP642 3.4 52.3 1.0 PB D:ADP1000 3.4 62.5 1.0 OD2 D:ASP564 3.5 55.2 1.0 CB D:THR541 3.6 55.5 1.0 O3B D:ADP1000 4.0 62.5 1.0 N D:THR541 4.1 55.5 1.0 O3A D:ADP1000 4.2 62.5 1.0 CG D:ASP642 4.3 52.3 1.0 OD1 D:ASP642 4.3 52.3 1.0 CA D:THR541 4.4 55.5 1.0 O2B D:ADP1000 4.5 62.5 1.0 O2A D:ADP1000 4.5 62.5 1.0 CG D:ASP564 4.6 55.2 1.0 CB D:MET540 4.6 52.4 1.0 CG2 D:THR541 4.6 55.5 1.0 CB D:ASP564 4.8 55.2 1.0 PA D:ADP1000 4.8 62.5 1.0 O1A D:ADP1000 4.9 62.5 1.0 O D:THR643 5.0 47.4 1.0 C D:MET540 5.0 52.4 1.0

Magnesium binding site 2 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1001 b:56.3 occ:1.00 O1B E:ADP1000 2.0 62.3 1.0 OG1 E:THR541 2.3 54.0 1.0 PB E:ADP1000 3.4 62.3 1.0 OD2 E:ASP642 3.4 47.9 1.0 OD2 E:ASP564 3.5 52.1 1.0 CB E:THR541 3.6 54.0 1.0 O3B E:ADP1000 4.0 62.3 1.0 N E:THR541 4.1 54.0 1.0 O3A E:ADP1000 4.2 62.3 1.0 CG E:ASP642 4.3 47.9 1.0 OD1 E:ASP642 4.3 47.9 1.0 CA E:THR541 4.4 54.0 1.0 O2B E:ADP1000 4.5 62.3 1.0 CG E:ASP564 4.5 52.1 1.0 O2A E:ADP1000 4.5 62.3 1.0 CG2 E:THR541 4.6 54.0 1.0 CB E:MET540 4.7 51.8 1.0 CB E:ASP564 4.8 52.1 1.0 PA E:ADP1000 4.8 62.3 1.0 O1A E:ADP1000 4.9 62.3 1.0 O E:THR643 5.0 44.9 1.0

Magnesium binding site 3 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1001 b:57.1 occ:1.00 O1B F:ADP1000 2.0 63.5 1.0 OG1 F:THR541 2.4 55.3 1.0 PB F:ADP1000 3.4 63.5 1.0 OD2 F:ASP564 3.6 51.3 1.0 OD2 F:ASP642 3.6 47.2 1.0 CB F:THR541 3.7 55.3 1.0 O3B F:ADP1000 4.0 63.5 1.0 N F:THR541 4.1 55.3 1.0 O3A F:ADP1000 4.2 63.5 1.0 CG F:ASP642 4.5 47.2 1.0 O2B F:ADP1000 4.5 63.5 1.0 CA F:THR541 4.5 55.3 1.0 OD1 F:ASP642 4.5 47.2 1.0 O2A F:ADP1000 4.5 63.5 1.0 CG F:ASP564 4.6 51.3 1.0 CG2 F:THR541 4.7 55.3 1.0 CB F:MET540 4.7 53.5 1.0 PA F:ADP1000 4.8 63.5 1.0 O1A F:ADP1000 4.9 63.5 1.0 CB F:ASP564 4.9 51.3 1.0

Magnesium binding site 4 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1001 b:56.2 occ:1.00 O1B G:ADP1000 2.0 60.2 1.0 OG1 G:THR541 2.3 54.7 1.0 PB G:ADP1000 3.4 60.2 1.0 OD2 G:ASP642 3.4 49.1 1.0 OD2 G:ASP564 3.5 52.0 1.0 CB G:THR541 3.6 54.7 1.0 O3B G:ADP1000 4.0 60.2 1.0 N G:THR541 4.1 54.7 1.0 O3A G:ADP1000 4.2 60.2 1.0 CG G:ASP642 4.3 49.1 1.0 OD1 G:ASP642 4.3 49.1 1.0 CA G:THR541 4.4 54.7 1.0 O2B G:ADP1000 4.5 60.2 1.0 CG G:ASP564 4.5 52.0 1.0 O2A G:ADP1000 4.5 60.2 1.0 CG2 G:THR541 4.6 54.7 1.0 CB G:MET540 4.7 52.0 1.0 CB G:ASP564 4.8 52.0 1.0 PA G:ADP1000 4.8 60.2 1.0 O1A G:ADP1000 4.9 60.2 1.0 O G:THR643 5.0 45.6 1.0

Magnesium binding site 5 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1001 b:59.8 occ:1.00 O1B H:ADP1000 2.0 64.2 1.0 OG1 H:THR541 2.3 57.9 1.0 PB H:ADP1000 3.4 64.2 1.0 OD2 H:ASP642 3.4 52.3 1.0 OD2 H:ASP564 3.5 55.1 1.0 CB H:THR541 3.6 57.9 1.0 O3B H:ADP1000 4.0 64.2 1.0 N H:THR541 4.1 57.9 1.0 O3A H:ADP1000 4.2 64.2 1.0 CG H:ASP642 4.3 52.3 1.0 OD1 H:ASP642 4.3 52.3 1.0 CA H:THR541 4.4 57.9 1.0 O2B H:ADP1000 4.5 64.2 1.0 CG H:ASP564 4.5 55.1 1.0 O2A H:ADP1000 4.5 64.2 1.0 CG2 H:THR541 4.6 57.9 1.0 CB H:MET540 4.7 54.8 1.0 CB H:ASP564 4.8 55.1 1.0 PA H:ADP1000 4.8 64.2 1.0 O1A H:ADP1000 4.9 64.2 1.0 O H:THR643 5.0 47.9 1.0

Magnesium binding site 6 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:54.7 occ:1.00 O1B A:ADP1000 2.0 59.6 1.0 OG1 A:THR541 2.2 56.3 1.0 OD2 A:ASP642 3.4 51.5 1.0 PB A:ADP1000 3.4 59.6 1.0 CB A:THR541 3.5 56.3 1.0 OD2 A:ASP564 3.6 55.8 1.0 O3B A:ADP1000 4.0 59.6 1.0 N A:THR541 4.0 56.3 1.0 O3A A:ADP1000 4.2 59.6 1.0 CG A:ASP642 4.3 51.5 1.0 CA A:THR541 4.3 56.3 1.0 OD1 A:ASP642 4.3 51.5 1.0 O2B A:ADP1000 4.5 59.6 1.0 CG2 A:THR541 4.5 56.3 1.0 O2A A:ADP1000 4.5 59.6 1.0 CG A:ASP564 4.6 55.8 1.0 CB A:MET540 4.7 52.7 1.0 CB A:ASP564 4.8 55.8 1.0 PA A:ADP1000 4.8 59.6 1.0 O1A A:ADP1000 4.9 59.6 1.0 C A:MET540 5.0 52.7 1.0

Magnesium binding site 7 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:62.2 occ:1.00 O1B B:ADP1000 2.0 63.8 1.0 OG1 B:THR541 2.4 60.1 1.0 OD2 B:ASP564 3.4 55.6 1.0 PB B:ADP1000 3.4 63.8 1.0 OD2 B:ASP642 3.5 52.9 1.0 CB B:THR541 3.7 60.1 1.0 O3B B:ADP1000 4.0 63.8 1.0 O3A B:ADP1000 4.2 63.8 1.0 N B:THR541 4.2 60.1 1.0 CG B:ASP642 4.3 52.9 1.0 CG B:ASP564 4.4 55.6 1.0 OD1 B:ASP642 4.4 52.9 1.0 O2B B:ADP1000 4.5 63.8 1.0 CA B:THR541 4.5 60.1 1.0 O2A B:ADP1000 4.5 63.8 1.0 CB B:ASP564 4.7 55.6 1.0 CG2 B:THR541 4.7 60.1 1.0 CB B:MET540 4.8 56.5 1.0 PA B:ADP1000 4.8 63.8 1.0 O1A B:ADP1000 4.9 63.8 1.0

Magnesium binding site 8 out of 8 in the Wzc-K540M-3YE Mgadp C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Wzc-K540M-3YE Mgadp C1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:61.8 occ:1.00 O1B C:ADP1000 2.0 63.2 1.0 OG1 C:THR541 2.3 57.5 1.0 PB C:ADP1000 3.4 63.2 1.0 OD2 C:ASP642 3.4 52.8 1.0 OD2 C:ASP564 3.5 54.3 1.0 CB C:THR541 3.6 57.5 1.0 O3B C:ADP1000 4.0 63.2 1.0 N C:THR541 4.1 57.5 1.0 O3A C:ADP1000 4.2 63.2 1.0 CG C:ASP642 4.3 52.8 1.0 OD1 C:ASP642 4.3 52.8 1.0 CA C:THR541 4.4 57.5 1.0 O2B C:ADP1000 4.5 63.2 1.0 CG C:ASP564 4.5 54.3 1.0 O2A C:ADP1000 4.5 63.2 1.0 CG2 C:THR541 4.6 57.5 1.0 CB C:MET540 4.7 55.4 1.0 CB C:ASP564 4.8 54.3 1.0 PA C:ADP1000 4.8 63.2 1.0 O1A C:ADP1000 4.9 63.2 1.0 O C:THR643 5.0 50.8 1.0

Y.Yang, M.Batista, B.R.Clarke, M.R.Agyare-Tabbi, H.Song, N.M.Kuehfuss, A.Le Bas, C.V.Robinson, C.Whitfield, P.J.Stansfeld, J.H.Naismith, J.Liu. Molecular Basis For the Phosphorylation of Bacterial Tyrosine Kinase Wzc. Nat Commun V. 16 3437 2025.
ISSN: ESSN 2041-1723
PubMed: 40210632
DOI: 10.1038/S41467-025-58693-7