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Magnesium in PDB 9ii7: Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B

Enzymatic activity of Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B

All present enzymatic activity of Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B:
2.7.7.6;

Other elements in 9ii7:

The structure of Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B also contains other interesting chemical elements:

Zinc (Zn) 10 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B (pdb code 9ii7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B, PDB code: 9ii7:

Magnesium binding site 1 out of 1 in 9ii7

Go back to Magnesium Binding Sites List in 9ii7
Magnesium binding site 1 out of 1 in the Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase II Elongation Complex Stalled at Shl(-1) of the Nucleosome Containing Histone Variant H2A.B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:36.8
occ:1.00
OD1 A:ASP484 2.1 31.6 1.0
O3' P:G10 2.3 64.4 1.0
OD1 A:ASP482 2.5 32.2 1.0
OD1 A:ASP486 2.5 32.0 1.0
CG A:ASP484 3.0 31.6 1.0
OD2 A:ASP484 3.1 31.6 1.0
CG A:ASP486 3.1 32.0 1.0
OD2 A:ASP486 3.1 32.0 1.0
CG A:ASP482 3.5 32.2 1.0
O2' P:G10 3.6 64.4 1.0
C3' P:G10 3.6 64.4 1.0
OD2 A:ASP482 3.8 32.2 1.0
C4' P:G10 4.1 64.4 1.0
C2' P:G10 4.2 64.4 1.0
NH1 A:ARG447 4.4 34.9 1.0
CB A:ASP486 4.4 32.0 1.0
CB A:ASP484 4.4 31.6 1.0
N A:ASP486 4.6 32.0 1.0
N A:ASP484 4.8 31.6 1.0
C5' P:G10 4.9 64.4 1.0
CB A:ASP482 4.9 32.2 1.0
N A:ASP482 4.9 32.2 1.0
CA A:ASP486 4.9 32.0 1.0
O A:ASP482 4.9 32.2 1.0
CA A:ASP484 5.0 31.6 1.0
C A:ASP484 5.0 31.6 1.0

Reference:

M.Akatsu, R.Hirano, T.Kujirai, M.Ogasawara, H.Ehara, S.I.Sekine, Y.Takizawa, H.Kurumizaka. Structural Basis of Rnapii Transcription on the Nucleosome Containing Histone Variant H2A.B. Embo J. 2025.
ISSN: ESSN 1460-2075
PubMed: 40447801
DOI: 10.1038/S44318-025-00473-6
Page generated: Sat Aug 16 04:10:54 2025

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