Magnesium in PDB 9ij1: Cryo-Em Structure of Mili-Pirna-Target (22-Nt, Bilobed)

The binding sites of Magnesium atom in the Cryo-Em Structure of Mili-Pirna-Target (22-Nt, Bilobed) (pdb code 9ij1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Mili-Pirna-Target (22-Nt, Bilobed), PDB code: 9ij1:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Mili-Pirna-Target (22-Nt, Bilobed)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mili-Pirna-Target (22-Nt, Bilobed) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:79.9 occ:1.00 OP1 C:U13 2.1 80.5 1.0 OP2 C:U13 2.3 83.0 1.0 P C:U13 2.6 88.6 1.0 OD2 A:ASP813 2.7 55.9 1.0 OD2 A:ASP743 2.8 44.7 1.0 OD1 A:ASP743 2.9 45.2 1.0 CG A:ASP743 3.2 48.4 1.0 CG A:ASP813 3.5 59.6 1.0 O5' C:U13 3.5 87.8 1.0 ND1 A:HIS946 3.8 52.5 1.0 O3' C:G12 3.9 67.5 1.0 OD1 A:ASP813 4.2 62.3 1.0 CB A:ASP813 4.3 50.8 1.0 CE1 A:HIS946 4.5 56.2 1.0 O A:VAL744 4.6 46.3 1.0 NZ A:LYS852 4.6 37.3 1.0 CG A:HIS946 4.6 57.8 1.0 O2' C:G12 4.7 75.4 1.0 C5' C:U13 4.7 71.3 1.0 CB A:ASP743 4.7 45.2 1.0 C3' C:G12 4.8 71.2 1.0 C4' C:G12 4.8 69.1 1.0 CB A:HIS946 4.8 58.1 1.0 CE A:LYS852 4.9 49.9 1.0

Z.Q.Li, Q.K.Xu, J.P.Wu, E.Z.Shen. Structural Insights Into Rna Cleavage By Piwi Argonaute Nature 2024.
ISSN: ESSN 1476-4687