Magnesium in PDB 9ij5: Cryo-Em Structure of Mili(K853A)-Pirna-Target

The binding sites of Magnesium atom in the Cryo-Em Structure of Mili(K853A)-Pirna-Target (pdb code 9ij5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Mili(K853A)-Pirna-Target, PDB code: 9ij5:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Mili(K853A)-Pirna-Target


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mili(K853A)-Pirna-Target within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:23.4 occ:1.00 OD1 A:ASP743 3.0 24.1 1.0 O3' C:G16 3.2 16.7 1.0 OD2 A:ASP743 3.3 25.7 1.0 CG A:ASP743 3.5 24.3 1.0 O A:VAL744 3.6 29.8 1.0 OD2 A:ASP813 3.9 16.3 1.0 CE1 A:HIS946 3.9 16.3 1.0 OP1 C:U17 4.0 28.0 1.0 CG A:ASP813 4.0 20.0 1.0 CA A:GLY814 4.1 28.3 1.0 C5' C:U17 4.1 26.4 1.0 C4' C:G16 4.1 18.3 1.0 ND1 A:HIS946 4.1 14.9 1.0 N A:GLY814 4.1 26.2 1.0 P C:U17 4.1 28.0 1.0 C3' C:G16 4.2 16.0 1.0 O2' C:G16 4.3 26.6 1.0 OD1 A:ASP813 4.4 19.3 1.0 O5' C:U17 4.4 28.7 1.0 C A:ASP813 4.5 18.0 1.0 CB A:ASP813 4.6 13.6 1.0 C5' C:G16 4.6 20.5 1.0 C A:VAL744 4.7 28.0 1.0 O A:ASP813 4.8 17.6 1.0 C2' C:G16 4.9 22.3 1.0 CB A:ASP743 4.9 16.2 1.0

Z.Q.Li, Q.K.Xu, J.P.Wu, E.Z.Shen. Structural Insights Into Rna Cleavage By Piwi Argonaute Nature 2024.
ISSN: ESSN 1476-4687