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Magnesium in PDB 9imj: Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture

Enzymatic activity of Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture

All present enzymatic activity of Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture:
5.6.2.2;

Protein crystallography data

The structure of Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture, PDB code: 9imj was solved by Y.H.Xin, Y.T.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.79 / 2.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.989, 90.989, 102.9, 90, 90, 120
R / Rfree (%) 23.3 / 29

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture (pdb code 9imj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture, PDB code: 9imj:

Magnesium binding site 1 out of 1 in 9imj

Go back to Magnesium Binding Sites List in 9imj
Magnesium binding site 1 out of 1 in the Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:50.6
occ:1.00
O2G A:ANP402 2.3 42.0 1.0
OD1 A:ASN58 2.9 45.2 1.0
OE1 A:GLU54 3.2 52.9 1.0
O2A A:ANP402 3.2 42.3 1.0
O A:GLU54 3.3 42.2 1.0
O1B A:ANP402 3.3 45.9 1.0
CG A:ASN58 3.6 39.0 1.0
ND2 A:ASN58 3.8 36.9 1.0
PG A:ANP402 3.8 37.7 1.0
CA A:GLU54 3.9 38.0 1.0
C A:GLU54 3.9 41.5 1.0
CB A:GLU54 4.0 40.1 1.0
CA A:GLY136 4.0 43.0 1.0
O3A A:ANP402 4.2 46.9 1.0
PB A:ANP402 4.2 42.5 1.0
CD A:GLU54 4.3 47.2 1.0
CB A:ASP57 4.3 37.4 1.0
C A:GLY136 4.4 44.8 1.0
N A:SER137 4.4 45.8 1.0
PA A:ANP402 4.4 42.1 1.0
O1G A:ANP402 4.5 43.9 1.0
N A:GLY136 4.5 42.7 1.0
N3B A:ANP402 4.5 42.1 1.0
N A:ASN58 4.6 40.1 1.0
CG A:GLU54 4.7 38.9 1.0
CB A:ASN58 4.8 40.9 1.0
O3G A:ANP402 4.8 40.0 1.0
CA A:ASN58 4.9 36.5 1.0

Reference:

Y.H.Xin, Y.T.Chen. Bacteriophage T6 Topoisomerase II Atpase Domain Crystal Strcuture To Be Published.
Page generated: Sat Oct 5 09:36:27 2024

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