Magnesium in PDB 9iw3: Cryo-Em Structure of Lactobacillus Casei Ddme Bound with Guide and Target

The binding sites of Magnesium atom in the Cryo-Em Structure of Lactobacillus Casei Ddme Bound with Guide and Target (pdb code 9iw3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Lactobacillus Casei Ddme Bound with Guide and Target, PDB code: 9iw3:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Lactobacillus Casei Ddme Bound with Guide and Target


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Lactobacillus Casei Ddme Bound with Guide and Target within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:30.0 occ:1.00 OP1 B:DA3 2.2 105.4 1.0 OP1 B:DT1 2.2 20.0 1.0 P B:DT1 3.1 20.0 1.0 OE1 A:GLU391 3.2 100.2 1.0 O5' B:DT1 3.4 20.0 1.0 C5' B:DT1 3.4 20.0 1.0 P B:DA3 3.6 105.4 1.0 OE1 A:GLN349 3.9 103.2 1.0 NE2 A:GLN349 3.9 103.2 1.0 C5' B:DA3 4.1 105.4 1.0 NZ A:LYS395 4.1 95.7 1.0 O5' B:DA3 4.2 105.4 1.0 CD A:GLN349 4.3 103.2 1.0 CD A:GLU391 4.4 100.2 1.0 O3' B:DG2 4.5 111.6 1.0 OP2 B:DT1 4.6 20.0 1.0 OP2 B:DA3 4.6 105.4 1.0 C4' B:DT1 4.9 20.0 1.0

P.Huang, P.Yan, L.Guo, W.Fei, Z.Li, J.Liu, J.Kong, Y.Yao, M.Lu, Y.Xiao, M.Chen. The Mechanism of Bacterial Defense System Ddmde From Lactobacillus Casei. Cell Res. V. 34 873 2024.
ISSN: ISSN 1001-0602
PubMed: 39448873
DOI: 10.1038/S41422-024-01042-Y