Magnesium in PDB 9j6y: Lactobacillus Salivarius Rool Rna Hexamer

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 56;

Binding sites:

The binding sites of Magnesium atom in the Lactobacillus Salivarius Rool Rna Hexamer (pdb code 9j6y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 56 binding sites of Magnesium where determined in the Lactobacillus Salivarius Rool Rna Hexamer, PDB code: 9j6y:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:30.0 occ:1.00 OP1 C:A58 4.3 30.4 1.0 N6 C:A168 4.6 24.6 1.0 N7 C:A168 4.6 25.2 1.0

Magnesium binding site 2 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:30.0 occ:1.00 N7 C:G209 4.9 32.3 1.0 O6 C:G209 5.0 30.5 1.0

Magnesium binding site 3 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg603 b:30.0 occ:1.00 OP2 C:A188 4.2 35.2 1.0 OP2 C:A494 4.7 40.3 1.0

Magnesium binding site 4 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg604 b:30.0 occ:1.00 O6 C:G334 2.7 12.4 1.0 C6 C:G334 3.9 3.4 1.0 N1 C:G334 4.5 0.0 1.0 N1 C:A335 4.6 18.6 1.0 OP2 C:U332 5.0 9.6 1.0 OP2 C:A395 5.0 10.1 1.0 C2 C:A335 5.0 21.8 1.0

Magnesium binding site 5 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg605 b:30.0 occ:1.00 O2' C:A485 4.0 23.6 1.0 O4' C:G330 4.0 12.4 1.0 N3 C:A485 4.3 5.5 1.0 C4 C:A485 4.4 6.1 1.0 C2 C:A485 4.5 6.3 1.0 C4' C:G330 4.5 5.0 1.0 O4 C:U487 4.6 34.6 1.0 C5 C:A485 4.7 7.9 1.0 N9 C:A485 4.8 9.0 1.0 N1 C:A485 4.8 6.1 1.0 C5' C:G330 4.9 7.6 1.0 O4 C:U331 4.9 20.0 1.0 C6 C:A485 4.9 10.3 1.0

Magnesium binding site 6 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg606 b:30.0 occ:1.00 OP2 C:G401 2.6 26.3 1.0 OP1 C:U399 2.9 16.6 1.0 P C:G401 3.9 18.3 1.0 P C:U399 4.1 18.3 1.0 O3' C:U398 4.2 16.7 1.0 O5' C:G401 4.4 27.0 1.0 OP1 C:G401 4.6 25.1 1.0 OP1 C:G400 4.6 27.3 1.0 C5' C:U399 4.7 16.3 1.0 O5' C:U399 4.8 10.4 1.0 C3' C:U399 5.0 16.9 1.0

Magnesium binding site 7 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg607 b:30.0 occ:1.00 O6 C:G325 4.1 26.1 1.0 O4 C:U326 4.2 22.8 1.0 O6 C:G202 4.2 12.0 1.0 O4 C:U201 4.3 29.4 1.0 N4 C:C203 4.5 8.8 1.0

Magnesium binding site 8 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg608 b:30.0 occ:1.00 O2' C:A23 4.3 31.3 1.0 OP1 C:A23 4.4 28.0 1.0 O6 C:G29 4.4 32.4 1.0 C2' C:A23 4.5 27.9 1.0 N7 C:G29 4.6 30.0 1.0 N7 C:A28 4.7 32.6 1.0 N6 C:A28 4.9 29.9 1.0

Magnesium binding site 9 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg609 b:30.0 occ:1.00 OP2 C:A280 3.0 33.2 1.0 OP1 C:A280 3.2 26.5 1.0 P C:A280 3.5 39.4 1.0 N7 C:G281 3.5 26.6 1.0 C8 C:G281 3.9 24.8 1.0 O5' C:A280 4.0 30.5 1.0 OP1 C:A279 4.7 32.8 1.0 C5 C:G281 4.7 23.7 1.0 OP2 C:G281 4.8 29.3 1.0 O3' C:A279 5.0 35.7 1.0

Magnesium binding site 10 out of 56 in the Lactobacillus Salivarius Rool Rna Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Lactobacillus Salivarius Rool Rna Hexamer within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:30.0 occ:1.00 OP1 F:A58 4.3 30.4 1.0 N6 F:A168 4.6 24.6 1.0 N7 F:A168 4.6 25.2 1.0

L.Wang, J.Xie, T.Gong, H.Wu, Y.Tu, X.Peng, S.Shang, X.Jia, H.Ma, J.Zou, S.Xu, X.Zheng, D.Zhang, Y.Liu, C.Zhang, Y.Luo, Z.Huang, B.Shao, B.Ying, Y.Cheng, Y.Guo, Y.Lai, D.Huang, J.Liu, Y.Wei, S.Sun, X.Zhou, Z.Su. Cryo-Em Reveals Mechanisms of Natural Rna Multivalency Science 2025.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADV3451