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Magnesium in PDB 9ji2: Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop

Enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop

All present enzymatic activity of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop:
2.7.7.6;

Other elements in 9ji2:

The structure of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop (pdb code 9ji2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop, PDB code: 9ji2:

Magnesium binding site 1 out of 1 in 9ji2

Go back to Magnesium Binding Sites List in 9ji2
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mycobacterium Tuberculosis Transcription Activation Complex with Unphosphated Phop within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2002

b:59.4
occ:1.00
 OD1 D:ASP535 2.1 63.4 1.0
OD1 D:ASP537 2.1 62.0 1.0
OD1 D:ASP539 2.3 62.1 1.0
OD2 D:ASP539 2.4 62.1 1.0
CG D:ASP539 2.6 62.1 1.0
CG D:ASP537 2.8 62.0 1.0
OD2 D:ASP537 2.9 62.0 1.0
CG D:ASP535 2.9 63.4 1.0
OD2 D:ASP535 3.2 63.4 1.0
O D:ASP535 3.8 63.4 1.0
CB D:ASP539 4.1 62.1 1.0
NH2 D:ARG500 4.1 60.9 1.0
CB D:ASP535 4.2 63.4 1.0
N D:ASP535 4.2 63.4 1.0
C D:ASP535 4.3 63.4 1.0
CB D:ASP537 4.3 62.0 1.0
CA D:ASP535 4.5 63.4 1.0
N D:ASP537 4.5 62.0 1.0
N D:ASP539 4.8 62.1 1.0
CA D:ASP539 4.9 62.1 1.0
CA D:ASP537 4.9 62.0 1.0

Reference:

J.Shi, Z.Feng, Q.Song, A.Wen, T.Liu, L.Xu, Z.Ye, S.Xu, F.Gao, L.Xiao, J.Zhu, K.Das, G.Zhao, J.Li, Y.Feng, W.Lin. Structural Insights Into Transcription Regulation of the Global Ompr/Phob Family Regulator Phop From Mycobacterium Tuberculosis Nat Commun V. 16 1573 2025.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-025-56697-X
Page generated: Sat Aug 16 04:45:17 2025

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