Magnesium in PDB 9jjw: Truncated RNF112, Gdp-Bound Form 1

The structure of Truncated RNF112, Gdp-Bound Form 1, PDB code: 9jjw was solved by Y.T.Zhong, L.L.Huang, S.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.28 / 2.09
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	91.461, 147.377, 71.111, 90, 90, 90
R / Rfree (%)	18.4 / 22.1

The binding sites of Magnesium atom in the Truncated RNF112, Gdp-Bound Form 1 (pdb code 9jjw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Truncated RNF112, Gdp-Bound Form 1, PDB code: 9jjw:

Magnesium binding site 1 out of 1 in the Truncated RNF112, Gdp-Bound Form 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Truncated RNF112, Gdp-Bound Form 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:42.5 occ:1.00 O A:ASN323 2.2 37.8 1.0 O A:HOH879 2.4 41.3 1.0 O A:HOH767 2.4 39.9 1.0 O A:HOH836 2.5 35.5 1.0 O A:HOH900 2.6 50.1 1.0 O A:HOH824 2.8 34.7 1.0 C A:ASN323 3.3 40.0 1.0 O A:HOH802 3.9 35.0 1.0 O A:HOH748 3.9 41.1 1.0 CA A:ASN323 4.0 41.2 1.0 O A:HOH775 4.1 50.5 1.0 NZ A:LYS421 4.1 32.2 1.0 CB A:ASN323 4.1 36.6 1.0 O A:HOH703 4.3 56.8 1.0 N A:GLN325 4.3 32.3 1.0 O A:HOH820 4.4 36.9 1.0 N A:LEU324 4.4 37.0 1.0 CG A:GLN325 4.4 41.6 1.0 O A:HOH783 4.5 47.3 1.0 OE1 A:GLN325 4.6 42.3 1.0 CA A:LEU324 4.7 35.6 1.0 O A:THR422 4.8 42.6 1.0 C A:LEU324 4.9 35.4 1.0 CB A:GLN325 4.9 33.7 1.0 OG1 A:THR422 4.9 53.1 1.0 O A:PHE288 5.0 31.7 1.0

Y.T.Zhong, L.L.Huang, K.Li, B.Yang, X.Ye, H.R.Zhong, B.Yu, M.Ma, Y.Yuan, Y.Meng, R.Pan, H.Zhang, L.Shi, Y.Wang, R.Tian, S.Gao, X.Bian. Structural and Functional Characterization of the Brain-Specific Dynamin Superfamily Member RNF112. Proc.Natl.Acad.Sci.Usa V. 122 49122 2025.
ISSN: ESSN 1091-6490
PubMed: 40198702
DOI: 10.1073/PNAS.2419449122