Magnesium in PDB 9jsb: Guide-Bound Nbasparda Complexes

The binding sites of Magnesium atom in the Guide-Bound Nbasparda Complexes (pdb code 9jsb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Guide-Bound Nbasparda Complexes, PDB code: 9jsb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Guide-Bound Nbasparda Complexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Guide-Bound Nbasparda Complexes within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:8.3 occ:1.00 OD1 A:ASN446 2.1 3.7 1.0 OP1 G:A3 2.4 5.7 1.0 OP1 G:A1 3.0 4.0 1.0 CG A:ASN446 3.2 3.7 1.0 OG A:SER236 3.4 5.9 1.0 P G:A3 3.6 5.7 1.0 O A:ILE485 3.6 4.8 1.0 O3' G:U2 3.9 8.6 1.0 P G:A1 4.0 4.0 1.0 CA A:ASN446 4.0 3.7 1.0 OP2 G:A1 4.0 4.0 1.0 O A:ASN446 4.0 3.7 1.0 ND2 A:ASN446 4.1 3.7 1.0 CB A:SER236 4.1 5.9 1.0 CB A:ASN446 4.2 3.7 1.0 OE1 A:GLN198 4.3 5.7 1.0 OP2 G:A3 4.3 5.7 1.0 NE2 A:GLN198 4.3 5.7 1.0 C A:ASN446 4.4 3.7 1.0 NZ A:LYS240 4.6 4.6 1.0 OP3 G:A1 4.7 4.0 1.0 C A:ILE485 4.7 4.8 1.0 CD A:GLN198 4.7 5.7 1.0 O5' G:A3 4.8 5.7 1.0 O A:TRP445 4.9 3.4 1.0

Magnesium binding site 2 out of 2 in the Guide-Bound Nbasparda Complexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Guide-Bound Nbasparda Complexes within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:0.5 occ:1.00 OD1 B:ASN446 2.1 3.1 1.0 OP1 H:A3 2.2 4.6 1.0 OP1 H:A1 3.2 3.1 1.0 CG B:ASN446 3.2 3.1 1.0 OG B:SER236 3.3 4.3 1.0 P H:A3 3.5 4.6 1.0 O B:ILE485 3.6 3.6 1.0 OP2 H:A1 3.7 3.1 1.0 O3' H:U2 3.9 4.7 1.0 P H:A1 3.9 3.1 1.0 O5' H:A3 4.0 4.6 1.0 CA B:ASN446 4.0 3.1 1.0 CB B:SER236 4.0 4.3 1.0 ND2 B:ASN446 4.1 3.1 1.0 CB B:ASN446 4.2 3.1 1.0 OE1 B:GLN198 4.2 3.6 1.0 O B:ASN446 4.3 3.1 1.0 NE2 B:GLN198 4.3 3.6 1.0 C B:ASN446 4.5 3.1 1.0 NZ B:LYS240 4.6 3.9 1.0 C B:ILE485 4.7 3.6 1.0 OP3 H:A1 4.7 3.1 1.0 CD B:GLN198 4.7 3.6 1.0 O B:TRP445 4.7 3.6 1.0 OP2 H:A3 4.8 4.6 1.0 O2' H:U2 4.9 4.7 1.0 CB B:ILE485 5.0 3.6 1.0

F.Wang, H.Xu, C.Zhang, J.Xue, Z.Li. Target Dna-Induced Filament Formation and Nuclease Activation of Sparda Complex. Cell Res. 2025.
ISSN: ISSN 1001-0602
PubMed: 40122999
DOI: 10.1038/S41422-025-01100-Z