Magnesium in PDB 9jsp: Inactive Nbasparda Complexes

The binding sites of Magnesium atom in the Inactive Nbasparda Complexes (pdb code 9jsp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Inactive Nbasparda Complexes, PDB code: 9jsp:

Magnesium binding site 1 out of 1 in the Inactive Nbasparda Complexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Inactive Nbasparda Complexes within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:3.5 occ:1.00 OP1 G:A3 2.4 12.8 1.0 OD1 A:ASN446 2.6 17.3 1.0 OP3 G:A1 2.7 9.8 1.0 CG A:ASN446 3.4 17.3 1.0 ND2 A:ASN446 3.4 17.3 1.0 O A:ILE485 3.5 5.7 1.0 C A:ILE485 3.6 5.7 1.0 P G:A3 3.6 12.8 1.0 P G:A1 4.1 9.8 1.0 O3' G:U2 4.2 13.0 1.0 OP2 G:A3 4.3 12.8 1.0 CG1 A:ILE485 4.4 5.7 1.0 NZ A:LYS463 4.5 17.1 1.0 C5' G:A1 4.5 9.8 1.0 O5' G:A1 4.6 9.8 1.0 CA A:ILE485 4.6 5.7 1.0 OP2 G:A1 4.6 9.8 1.0 OE1 A:GLN198 4.6 5.1 1.0 CB A:ASN446 4.9 17.3 1.0 O5' G:A3 4.9 12.8 1.0 CE A:LYS240 4.9 5.0 1.0 OG A:SER236 4.9 8.3 1.0 NZ A:LYS240 5.0 5.0 1.0

F.Wang, H.Xu, C.Zhang, J.Xue, Z.Li. Target Dna-Induced Filament Formation and Nuclease Activation of Sparda Complex. Cell Res. 2025.
ISSN: ISSN 1001-0602
PubMed: 40122999
DOI: 10.1038/S41422-025-01100-Z