Magnesium in PDB 9jxs: Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna

The binding sites of Magnesium atom in the Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna (pdb code 9jxs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna, PDB code: 9jxs:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:74.8 occ:1.00 SG C:CYS218 2.4 105.1 1.0 SG C:CYS314 2.4 121.0 1.0 SG C:CYS215 2.5 118.0 1.0 NH2 C:ARG101 3.3 125.2 1.0 CB C:CYS215 3.7 116.0 1.0 CB C:CYS314 3.9 127.7 1.0 CB C:CYS218 4.1 101.3 1.0 N C:CYS218 4.4 98.4 1.0 CZ C:ARG101 4.4 125.5 1.0 CB C:LEU316 4.5 118.1 1.0 CA C:CYS215 4.7 112.2 1.0 N C:CYS215 4.7 109.5 1.0 CB C:ALA217 4.7 96.6 1.0 NH1 C:ARG101 4.8 126.5 1.0 CA C:CYS218 4.9 99.0 1.0 CD1 C:LEU316 4.9 122.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:94.7 occ:1.00 SG B:CYS329 2.4 88.6 1.0 SG B:CYS298 2.4 107.9 1.0 SG B:CYS301 2.4 117.2 1.0 CB B:CYS332 3.0 75.8 1.0 CG1 B:VAL300 3.2 104.1 1.0 SG B:CYS332 3.6 79.2 1.0 CD2 B:LEU328 3.6 94.9 1.0 CD1 B:LEU328 3.8 92.0 1.0 CB B:CYS298 3.8 115.3 1.0 N B:CYS301 3.9 114.1 1.0 CB B:CYS329 3.9 95.5 1.0 CB B:CYS301 4.0 111.5 1.0 NH1 B:ARG365 4.0 74.9 1.0 N B:CYS329 4.1 92.1 1.0 CA B:CYS332 4.2 75.2 1.0 N B:CYS332 4.3 71.1 1.0 CG B:LEU328 4.3 92.8 1.0 CA B:CYS301 4.4 111.9 1.0 N B:VAL300 4.5 103.3 1.0 CA B:CYS329 4.5 93.4 1.0 CB B:VAL300 4.6 104.4 1.0 C B:CYS301 4.7 109.8 1.0 O B:CYS301 4.7 108.0 1.0 N B:MET299 4.8 103.6 1.0 C B:VAL300 4.8 110.8 1.0 CA B:VAL300 4.9 106.1 1.0 CA B:CYS298 4.9 117.9 1.0 O B:CYS329 5.0 94.6 1.0 C B:CYS329 5.0 92.8 1.0

Y.N.Liu, L.Wang, H.Zhang, H.Zhu. Cryo-Em Structure of CAS5-Hnh Cascade Bound with Dsdna To Be Published.