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Magnesium in PDB 9l14: Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase

Enzymatic activity of Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase

All present enzymatic activity of Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase:
2.7.4.3;

Protein crystallography data

The structure of Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase, PDB code: 9l14 was solved by I.Nakamura, H.Amesaka, S.I.Tanaka, T.Matsuo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.76 / 1.86
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 63.53, 63.53, 128.91, 90, 90, 120
R / Rfree (%) 19.2 / 23.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase (pdb code 9l14). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase, PDB code: 9l14:

Magnesium binding site 1 out of 1 in 9l14

Go back to Magnesium Binding Sites List in 9l14
Magnesium binding site 1 out of 1 in the Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Monobody Cl-1 in Complex with the Escherichia Coli Adenylate Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:25.8
occ:1.00
 O A:HOH407 2.0 31.9 1.0
O2G A:AP5301 2.1 26.6 1.0
O2B A:AP5301 2.1 21.1 1.0
O A:HOH427 2.2 29.5 1.0
O A:HOH426 2.2 28.5 1.0
O A:HOH444 2.2 29.1 1.0
PG A:AP5301 3.2 26.1 1.0
PB A:AP5301 3.3 25.7 1.0
O3B A:AP5301 3.6 28.2 1.0
O3G A:AP5301 3.9 31.4 1.0
O1A A:AP5301 4.1 27.8 1.0
N A:GLY14 4.1 23.3 1.0
CA A:GLY14 4.2 27.1 1.0
OD2 A:ASP84 4.2 34.5 1.0
O2E A:AP5301 4.3 28.9 1.0
O1B A:AP5301 4.4 25.3 1.0
O3D A:AP5301 4.4 34.4 1.0
O3A A:AP5301 4.4 25.4 1.0
O1E A:AP5301 4.5 27.6 1.0
O1G A:AP5301 4.5 29.9 1.0
OD1 A:ASP84 4.6 31.6 1.0
PE A:AP5301 4.6 26.4 1.0
PA A:AP5301 4.7 25.3 1.0
CG A:ASP84 4.8 32.7 1.0
O2A A:AP5301 4.9 24.9 1.0
PD A:AP5301 5.0 41.1 1.0

Reference:

I.Nakamura, H.Amesaka, S.Nagao, N.Orito, S.Negi, S.I.Tanaka, T.Matsuo. Binding Mechanism of Adenylate Kinase-Specific Monobodies. Febs Lett. 2025.
ISSN: ISSN 0014-5793
PubMed: 40400134
DOI: 10.1002/1873-3468.70076
Page generated: Sat Aug 16 05:23:22 2025

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