Atomistry » Magnesium » PDB 9kqq-9mgz » 9m84
Atomistry »
  Magnesium »
    PDB 9kqq-9mgz »
      9m84 »

Magnesium in PDB 9m84: Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter

Enzymatic activity of Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter

All present enzymatic activity of Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter:
2.7.7.6;

Other elements in 9m84:

The structure of Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter (pdb code 9m84). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter, PDB code: 9m84:

Magnesium binding site 1 out of 1 in 9m84

Go back to Magnesium Binding Sites List in 9m84
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Streptomyces Coelicolor Sigma Factor Shba Transcription Initiation Complex with Shba Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1401

b:68.7
occ:1.00
OD2 D:ASP539 1.9 57.1 1.0
CG D:ASP539 2.4 57.1 1.0
OD1 D:ASP539 2.4 57.1 1.0
OD1 D:ASP535 2.6 58.6 1.0
CG D:ASP535 3.6 58.6 1.0
CB D:ASP537 3.7 52.5 1.0
CB D:ASP539 3.8 57.1 1.0
O D:ASP535 3.8 58.6 1.0
OD2 D:ASP535 3.9 58.6 1.0
N D:ASP537 4.1 52.5 1.0
NH2 D:ARG500 4.2 86.0 1.0
CA D:ASP537 4.4 52.5 1.0
CG D:ASP537 4.4 52.5 1.0
C D:ASP535 4.6 58.6 1.0
CA D:ASP539 4.6 57.1 1.0
N D:ASP539 4.6 57.1 1.0
OD1 D:ASP537 4.7 52.5 1.0
C D:ASP537 4.7 52.5 1.0
CB D:ASP535 4.9 58.6 1.0
O D:ASP537 5.0 52.5 1.0

Reference:

G.Liu, X.Yang, W.Yan, Y.Wang, F.Yu, J.Zheng. Molecular Basis of Streptomyces Ecf Sigma Shba Factors Transcribing Principal Sigma Hrdb Genes. Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 40272361
DOI: 10.1093/NAR/GKAF339
Page generated: Sat Aug 16 05:36:00 2025

Last articles

Mn in 1JAI
Mn in 1J2T
Mn in 1IZL
Mn in 1J53
Mn in 1J25
Mn in 1IXB
Mn in 1IX9
Mn in 1HTQ
Mn in 1IT6
Mn in 1ITW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy