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Magnesium in PDB 9mf6: Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex)

Enzymatic activity of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex)

All present enzymatic activity of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex):
2.7.1.90;

Protein crystallography data

The structure of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex), PDB code: 9mf6 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.96 / 2.65
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.96, 86.96, 473.874, 90, 90, 90
R / Rfree (%) 20.8 / 26.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex) (pdb code 9mf6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex), PDB code: 9mf6:

Magnesium binding site 1 out of 1 in 9mf6

Go back to Magnesium Binding Sites List in 9mf6
Magnesium binding site 1 out of 1 in the Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1- Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O- Phosphono-Alpha-D-Ribofuranose Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg504

b:99.5
occ:1.00
 OD1 A:ASP114 2.1 115.3 1.0
OPP A:PPV505 2.7 111.3 1.0
CG A:ASP114 3.0 114.8 1.0
OD2 A:ASP115 3.1 118.8 1.0
OD2 A:ASP114 3.1 113.9 1.0
O22 A:PPV505 3.3 99.8 1.0
O21 A:PPV505 3.3 114.5 1.0
P1 A:PPV505 3.5 120.7 1.0
P2 A:PPV505 3.6 100.1 1.0
O11 A:PPV505 3.7 125.3 1.0
CG A:ASP115 4.0 115.4 1.0
O12 A:PPV505 4.2 109.3 1.0
N A:ASP115 4.3 118.8 1.0
CB A:ASP114 4.4 108.8 1.0
N A:ASP114 4.5 115.2 1.0
CB A:ASP115 4.6 122.0 1.0
OD2 A:ASP144 4.6 88.7 1.0
OD1 A:ASP115 4.8 114.2 1.0
O32 A:PPV505 4.8 107.7 1.0
OD2 A:ASP142 4.9 92.7 1.0
CA A:ASP114 4.9 110.1 1.0
O31 A:PPV505 4.9 115.7 1.0

Reference:

S.Seibold, L.Liu, S.Lovell, K.P.Battaile. Crystal Structure of Pyrophosphate-Fructose 6-Phosphate 1-Phosphotransferase 1 (PFK1) From Trichomonas Vaginalis (Adp/5-O-Phosphono-Alpha-D-Ribofuranose Complex) To Be Published.
Page generated: Sat Feb 8 22:47:17 2025

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