Magnesium in PDB 9nl2: Structure of R2 Retrotransposon Protein From Platysternon Megacephalum Initiating Target-Primed Reverse Transcription

The structure of Structure of R2 Retrotransposon Protein From Platysternon Megacephalum Initiating Target-Primed Reverse Transcription also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Magnesium atom in the Structure of R2 Retrotransposon Protein From Platysternon Megacephalum Initiating Target-Primed Reverse Transcription (pdb code 9nl2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of R2 Retrotransposon Protein From Platysternon Megacephalum Initiating Target-Primed Reverse Transcription, PDB code: 9nl2:

Magnesium binding site 1 out of 1 in the Structure of R2 Retrotransposon Protein From Platysternon Megacephalum Initiating Target-Primed Reverse Transcription


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of R2 Retrotransposon Protein From Platysternon Megacephalum Initiating Target-Primed Reverse Transcription within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1201 b:32.9 occ:1.00 O1B A:TTP1206 1.8 41.1 0.7 OD2 A:ASP506 2.0 70.0 1.0 OD1 A:ASP506 2.1 58.8 1.0 CG A:ASP506 2.3 62.7 1.0 O1A A:TTP1206 2.3 47.9 0.7 OD2 A:ASP606 2.4 58.4 1.0 O A:ILE507 2.4 56.7 1.0 O1G A:TTP1206 3.0 48.1 0.7 PB A:TTP1206 3.3 45.2 0.7 C A:ILE507 3.5 56.6 1.0 CG A:ASP606 3.6 56.6 1.0 PA A:TTP1206 3.6 52.7 0.7 CB A:ASP506 3.8 53.0 1.0 N A:ILE507 3.9 50.8 1.0 O3A A:TTP1206 3.9 49.6 0.7 O3B A:TTP1206 4.1 49.7 0.7 PG A:TTP1206 4.1 57.0 0.7 OD1 A:ASP606 4.2 56.8 1.0 C A:ASP506 4.2 57.9 1.0 O2B A:TTP1206 4.3 45.5 0.7 CA A:ILE507 4.3 55.0 1.0 OD1 A:ASP607 4.4 62.7 1.0 O2A A:TTP1206 4.4 45.3 0.7 CA A:ASP506 4.4 52.8 1.0 N A:ALA508 4.5 58.1 1.0 NZ A:LYS640 4.6 63.3 1.0 CA A:ALA508 4.6 60.4 1.0 O3G A:TTP1206 4.7 56.5 0.7 CB A:ASP606 4.7 51.5 1.0 O5' A:TTP1206 4.8 52.0 0.7 NE2 A:GLN637 4.8 66.4 1.0 O A:ASP506 4.8 66.8 1.0 C5' A:TTP1206 4.8 44.2 0.7 N A:LYS509 4.9 56.9 1.0

A.Thawani, A.Rodriguez-Vargas, B.Van Treeck, N.T.Hassan, D.A.Adelson, E.Nogales, K.Collins. Structures of Vertebrate R2 Retrotransposon Complexes During Target-Primed Reverse Transcription and After Second Strand Nicking To Be Published.