Magnesium in PDB 9ofd: Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer

All present enzymatic activity of Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer:
3.5.4.4;

The structure of Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Magnesium atom in the Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer (pdb code 9ofd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer, PDB code: 9ofd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg701 b:85.6 occ:1.00 O2B H:ATP702 2.0 99.8 1.0 O2G H:ATP702 2.8 97.0 1.0 O H:GLY314 3.3 91.4 1.0 PB H:ATP702 3.3 104.5 1.0 O3G H:ATP702 3.4 99.0 1.0 PG H:ATP702 3.5 105.9 1.0 O3B H:ATP702 3.5 101.0 1.0 O H:ASN317 4.0 82.8 1.0 O1B H:ATP702 4.1 97.7 1.0 O H:GLY264 4.2 79.4 1.0 O2A H:ATP702 4.2 98.9 1.0 CA H:GLY318 4.4 75.3 1.0 O3A H:ATP702 4.4 102.5 1.0 C H:GLY314 4.4 89.9 1.0 H3' H:ATP702 4.8 96.7 1.0 O H:MET311 4.8 95.7 1.0 C H:GLY264 4.9 75.0 1.0 O1G H:ATP702 4.9 96.1 1.0 C H:ASN317 5.0 79.2 1.0 PA H:ATP702 5.0 111.0 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of CAD1 Bound with CA4 and Atp, Hexamer with One Intact Dimer within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg702 b:71.2 occ:1.00 O2B K:ATP701 2.2 114.3 1.0 O2G K:ATP701 2.6 113.0 1.0 O3G K:ATP701 2.7 113.5 1.0 PG K:ATP701 3.0 117.0 1.0 PB K:ATP701 3.1 113.7 1.0 O3B K:ATP701 3.2 114.3 1.0 O1B K:ATP701 3.7 109.4 1.0 O K:GLY264 4.4 75.6 1.0 H5'2 K:ATP701 4.4 114.7 1.0 O1G K:ATP701 4.5 114.1 1.0 O3A K:ATP701 4.5 115.2 1.0 OD1 K:ASP315 4.5 72.0 1.0 H5'1 K:ATP701 4.6 114.0 1.0 O K:GLY314 4.6 69.0 1.0 O K:ASN317 4.6 66.8 1.0 O2A K:ATP701 4.9 111.4 1.0 CA K:GLY318 4.9 62.6 1.0 N K:SER319 5.0 54.3 1.0 C5' K:ATP701 5.0 114.4 1.0

Y.Zhao, H.Li. Sequential Conformational Activation of A Carf-Fused Adenosine Deaminase By Cyclic Oligoadenylates To Be Published.