Magnesium in PDB 9ofj: Ci Ring of Dusk State Kaic
Enzymatic activity of Ci Ring of Dusk State Kaic
All present enzymatic activity of Ci Ring of Dusk State Kaic:
2.7.11.1;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Ci Ring of Dusk State Kaic
(pdb code 9ofj). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Ci Ring of Dusk State Kaic, PDB code: 9ofj:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 9ofj
Go back to
Magnesium Binding Sites List in 9ofj
Magnesium binding site 1 out
of 6 in the Ci Ring of Dusk State Kaic
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Ci Ring of Dusk State Kaic within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1002
b:28.7
occ:1.00
|
O2B
|
A:ATP1001
|
1.9
|
29.3
|
1.0
|
O2G
|
A:ATP1001
|
2.0
|
45.2
|
1.0
|
O3B
|
A:ATP1001
|
2.2
|
31.0
|
1.0
|
OG1
|
A:THR53
|
2.4
|
27.9
|
1.0
|
PB
|
A:ATP1001
|
2.5
|
22.3
|
1.0
|
PG
|
A:ATP1001
|
2.6
|
46.1
|
1.0
|
O3A
|
A:ATP1001
|
3.0
|
24.0
|
1.0
|
O3G
|
A:ATP1001
|
3.4
|
37.2
|
1.0
|
CB
|
A:THR53
|
3.4
|
26.2
|
1.0
|
OE2
|
A:GLU77
|
3.9
|
70.3
|
1.0
|
O1B
|
A:ATP1001
|
3.9
|
23.6
|
1.0
|
O1G
|
A:ATP1001
|
3.9
|
41.2
|
1.0
|
O1A
|
A:ATP1001
|
3.9
|
26.4
|
1.0
|
NH2
|
B:ARG226
|
4.0
|
42.5
|
1.0
|
PA
|
A:ATP1001
|
4.1
|
24.6
|
1.0
|
N
|
A:THR53
|
4.1
|
21.1
|
1.0
|
NE
|
B:ARG226
|
4.3
|
36.9
|
1.0
|
CA
|
A:THR53
|
4.4
|
20.2
|
1.0
|
CG2
|
A:THR53
|
4.4
|
31.3
|
1.0
|
CZ
|
B:ARG226
|
4.6
|
38.8
|
1.0
|
OD1
|
A:ASP145
|
4.8
|
59.5
|
1.0
|
CD
|
A:GLU77
|
5.0
|
71.0
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 9ofj
Go back to
Magnesium Binding Sites List in 9ofj
Magnesium binding site 2 out
of 6 in the Ci Ring of Dusk State Kaic
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Ci Ring of Dusk State Kaic within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1002
b:28.7
occ:1.00
|
O2B
|
B:ATP1001
|
1.9
|
29.3
|
1.0
|
O2G
|
B:ATP1001
|
2.0
|
45.2
|
1.0
|
O3B
|
B:ATP1001
|
2.2
|
31.0
|
1.0
|
OG1
|
B:THR53
|
2.4
|
27.9
|
1.0
|
PB
|
B:ATP1001
|
2.5
|
22.3
|
1.0
|
PG
|
B:ATP1001
|
2.6
|
46.1
|
1.0
|
O3A
|
B:ATP1001
|
3.0
|
24.0
|
1.0
|
O3G
|
B:ATP1001
|
3.4
|
37.2
|
1.0
|
CB
|
B:THR53
|
3.4
|
26.2
|
1.0
|
O1B
|
B:ATP1001
|
3.9
|
23.6
|
1.0
|
OE2
|
B:GLU77
|
3.9
|
70.3
|
1.0
|
O1G
|
B:ATP1001
|
3.9
|
41.2
|
1.0
|
O1A
|
B:ATP1001
|
3.9
|
26.4
|
1.0
|
NH2
|
C:ARG226
|
4.0
|
42.5
|
1.0
|
PA
|
B:ATP1001
|
4.1
|
24.6
|
1.0
|
N
|
B:THR53
|
4.1
|
21.1
|
1.0
|
NE
|
C:ARG226
|
4.3
|
36.9
|
1.0
|
CA
|
B:THR53
|
4.4
|
20.2
|
1.0
|
CG2
|
B:THR53
|
4.4
|
31.3
|
1.0
|
CZ
|
C:ARG226
|
4.6
|
38.8
|
1.0
|
OD1
|
B:ASP145
|
4.8
|
59.5
|
1.0
|
CD
|
B:GLU77
|
5.0
|
71.0
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 9ofj
Go back to
Magnesium Binding Sites List in 9ofj
Magnesium binding site 3 out
of 6 in the Ci Ring of Dusk State Kaic
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Ci Ring of Dusk State Kaic within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1002
b:28.7
occ:1.00
|
O2B
|
C:ATP1001
|
1.9
|
29.3
|
1.0
|
O2G
|
C:ATP1001
|
2.0
|
45.2
|
1.0
|
O3B
|
C:ATP1001
|
2.2
|
31.0
|
1.0
|
OG1
|
C:THR53
|
2.4
|
27.9
|
1.0
|
PB
|
C:ATP1001
|
2.5
|
22.3
|
1.0
|
PG
|
C:ATP1001
|
2.6
|
46.1
|
1.0
|
O3A
|
C:ATP1001
|
3.0
|
24.0
|
1.0
|
O3G
|
C:ATP1001
|
3.4
|
37.2
|
1.0
|
CB
|
C:THR53
|
3.4
|
26.2
|
1.0
|
O1B
|
C:ATP1001
|
3.9
|
23.6
|
1.0
|
OE2
|
C:GLU77
|
3.9
|
70.3
|
1.0
|
O1G
|
C:ATP1001
|
3.9
|
41.2
|
1.0
|
O1A
|
C:ATP1001
|
3.9
|
26.4
|
1.0
|
NH2
|
D:ARG226
|
4.1
|
42.5
|
1.0
|
PA
|
C:ATP1001
|
4.1
|
24.6
|
1.0
|
N
|
C:THR53
|
4.1
|
21.1
|
1.0
|
NE
|
D:ARG226
|
4.3
|
36.9
|
1.0
|
CA
|
C:THR53
|
4.4
|
20.2
|
1.0
|
CG2
|
C:THR53
|
4.4
|
31.3
|
1.0
|
CZ
|
D:ARG226
|
4.6
|
38.8
|
1.0
|
OD1
|
C:ASP145
|
4.8
|
59.5
|
1.0
|
CD
|
C:GLU77
|
5.0
|
71.0
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 9ofj
Go back to
Magnesium Binding Sites List in 9ofj
Magnesium binding site 4 out
of 6 in the Ci Ring of Dusk State Kaic
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Ci Ring of Dusk State Kaic within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1002
b:28.7
occ:1.00
|
O2B
|
D:ATP1001
|
1.9
|
29.3
|
1.0
|
O2G
|
D:ATP1001
|
2.0
|
45.2
|
1.0
|
O3B
|
D:ATP1001
|
2.2
|
31.0
|
1.0
|
OG1
|
D:THR53
|
2.4
|
27.9
|
1.0
|
PB
|
D:ATP1001
|
2.5
|
22.3
|
1.0
|
PG
|
D:ATP1001
|
2.6
|
46.1
|
1.0
|
O3A
|
D:ATP1001
|
3.0
|
24.0
|
1.0
|
O3G
|
D:ATP1001
|
3.4
|
37.2
|
1.0
|
CB
|
D:THR53
|
3.4
|
26.2
|
1.0
|
O1B
|
D:ATP1001
|
3.9
|
23.6
|
1.0
|
OE2
|
D:GLU77
|
3.9
|
70.3
|
1.0
|
O1G
|
D:ATP1001
|
3.9
|
41.2
|
1.0
|
O1A
|
D:ATP1001
|
3.9
|
26.4
|
1.0
|
NH2
|
E:ARG226
|
4.1
|
42.5
|
1.0
|
PA
|
D:ATP1001
|
4.1
|
24.6
|
1.0
|
N
|
D:THR53
|
4.1
|
21.1
|
1.0
|
NE
|
E:ARG226
|
4.3
|
36.9
|
1.0
|
CA
|
D:THR53
|
4.4
|
20.2
|
1.0
|
CG2
|
D:THR53
|
4.4
|
31.3
|
1.0
|
CZ
|
E:ARG226
|
4.6
|
38.8
|
1.0
|
OD1
|
D:ASP145
|
4.8
|
59.5
|
1.0
|
CD
|
D:GLU77
|
5.0
|
71.0
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 9ofj
Go back to
Magnesium Binding Sites List in 9ofj
Magnesium binding site 5 out
of 6 in the Ci Ring of Dusk State Kaic
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Ci Ring of Dusk State Kaic within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1002
b:28.7
occ:1.00
|
O2B
|
E:ATP1001
|
1.9
|
29.3
|
1.0
|
O2G
|
E:ATP1001
|
2.0
|
45.2
|
1.0
|
O3B
|
E:ATP1001
|
2.2
|
31.0
|
1.0
|
OG1
|
E:THR53
|
2.4
|
27.9
|
1.0
|
PB
|
E:ATP1001
|
2.5
|
22.3
|
1.0
|
PG
|
E:ATP1001
|
2.6
|
46.1
|
1.0
|
O3A
|
E:ATP1001
|
3.0
|
24.0
|
1.0
|
O3G
|
E:ATP1001
|
3.4
|
37.2
|
1.0
|
CB
|
E:THR53
|
3.4
|
26.2
|
1.0
|
O1B
|
E:ATP1001
|
3.9
|
23.6
|
1.0
|
OE2
|
E:GLU77
|
3.9
|
70.3
|
1.0
|
O1G
|
E:ATP1001
|
3.9
|
41.2
|
1.0
|
O1A
|
E:ATP1001
|
3.9
|
26.4
|
1.0
|
NH2
|
F:ARG226
|
4.1
|
42.5
|
1.0
|
PA
|
E:ATP1001
|
4.1
|
24.6
|
1.0
|
N
|
E:THR53
|
4.1
|
21.1
|
1.0
|
NE
|
F:ARG226
|
4.3
|
36.9
|
1.0
|
CA
|
E:THR53
|
4.4
|
20.2
|
1.0
|
CG2
|
E:THR53
|
4.4
|
31.3
|
1.0
|
CZ
|
F:ARG226
|
4.6
|
38.8
|
1.0
|
OD1
|
E:ASP145
|
4.8
|
59.5
|
1.0
|
CD
|
E:GLU77
|
5.0
|
71.0
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 9ofj
Go back to
Magnesium Binding Sites List in 9ofj
Magnesium binding site 6 out
of 6 in the Ci Ring of Dusk State Kaic
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Ci Ring of Dusk State Kaic within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1002
b:28.7
occ:1.00
|
O2B
|
F:ATP1001
|
1.9
|
29.3
|
1.0
|
O2G
|
F:ATP1001
|
2.0
|
45.2
|
1.0
|
O3B
|
F:ATP1001
|
2.2
|
31.0
|
1.0
|
OG1
|
F:THR53
|
2.4
|
27.9
|
1.0
|
PB
|
F:ATP1001
|
2.5
|
22.3
|
1.0
|
PG
|
F:ATP1001
|
2.6
|
46.1
|
1.0
|
O3A
|
F:ATP1001
|
3.0
|
24.0
|
1.0
|
O3G
|
F:ATP1001
|
3.4
|
37.2
|
1.0
|
CB
|
F:THR53
|
3.4
|
26.2
|
1.0
|
O1B
|
F:ATP1001
|
3.9
|
23.6
|
1.0
|
OE2
|
F:GLU77
|
3.9
|
70.3
|
1.0
|
O1G
|
F:ATP1001
|
3.9
|
41.2
|
1.0
|
O1A
|
F:ATP1001
|
3.9
|
26.4
|
1.0
|
NH2
|
A:ARG226
|
4.1
|
42.5
|
1.0
|
PA
|
F:ATP1001
|
4.1
|
24.6
|
1.0
|
N
|
F:THR53
|
4.1
|
21.1
|
1.0
|
NE
|
A:ARG226
|
4.3
|
36.9
|
1.0
|
CA
|
F:THR53
|
4.4
|
20.2
|
1.0
|
CG2
|
F:THR53
|
4.4
|
31.3
|
1.0
|
CZ
|
A:ARG226
|
4.6
|
38.8
|
1.0
|
OD1
|
F:ASP145
|
4.8
|
59.5
|
1.0
|
CD
|
F:GLU77
|
5.0
|
71.0
|
1.0
|
|
Reference:
J.V.Dzimianski,
P.Crosby,
V.H.Balasco Serrao,
C.L.Partch.
Ci Ring of Dusk State Kaic To Be Published.
Page generated: Sat Aug 16 07:01:33 2025
|