Magnesium in PDB 9okc: 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17

All present enzymatic activity of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17:
3.6.4.6;

The binding sites of Magnesium atom in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17 (pdb code 9okc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17, PDB code: 9okc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg803 b:78.3 occ:1.00 HG1 D:THR267 1.7 99.3 1.0 O3 D:PO4804 2.0 85.7 1.0 O1 D:PO4804 2.1 85.7 1.0 OG1 D:THR267 2.2 99.3 1.0 P D:PO4804 2.3 85.7 1.0 O2 D:PO4804 3.0 85.7 1.0 CB D:THR267 3.5 99.3 1.0 HE1 D:MET372 3.6 104.3 1.0 HE3 D:MET372 3.6 104.3 1.0 O1B D:ADP802 3.6 68.0 1.0 HB D:THR267 3.7 99.3 1.0 O4 D:PO4804 3.8 85.7 1.0 HG21 D:THR267 3.9 99.3 1.0 CE D:MET372 3.9 104.3 1.0 HE2 D:MET372 4.0 104.3 1.0 OD1 D:ASP328 4.1 113.3 1.0 HH22 C:ARG388 4.2 77.5 1.0 H D:THR267 4.2 99.3 1.0 CG2 D:THR267 4.2 99.3 1.0 O1A D:ADP802 4.3 68.0 1.0 O3B D:ADP802 4.3 68.0 1.0 O C:ASP359 4.5 82.8 1.0 OD2 D:ASP328 4.5 113.3 1.0 CA D:THR267 4.5 99.3 1.0 PB D:ADP802 4.6 68.0 1.0 HA D:THR267 4.6 99.3 1.0 HA2 C:GLY360 4.6 85.7 1.0 OE2 D:GLU329 4.6 111.0 1.0 N D:THR267 4.7 99.3 1.0 HG23 D:THR267 4.7 99.3 1.0 CG D:ASP328 4.8 113.3 1.0 HE3 D:LYS266 4.8 96.8 1.0 HB2 D:LYS266 4.9 96.8 1.0 NH2 C:ARG388 5.0 77.5 1.0

Magnesium binding site 2 out of 2 in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 17 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg803 b:114.0 occ:1.00 O1G E:ATP801 2.2 120.5 1.0 HG1 E:THR267 2.2 144.1 1.0 HG21 E:THR267 2.8 144.1 1.0 OG1 E:THR267 2.9 144.1 1.0 HA2 D:GLY360 3.1 139.9 1.0 HG23 E:THR267 3.1 144.1 1.0 CG2 E:THR267 3.3 144.1 1.0 PG E:ATP801 3.4 120.5 1.0 CB E:THR267 3.6 144.1 1.0 O3G E:ATP801 3.8 120.5 1.0 O3B E:ATP801 3.9 120.5 1.0 OD1 E:ASP328 3.9 155.2 1.0 CA D:GLY360 4.0 139.9 1.0 HB E:THR267 4.0 144.1 1.0 O D:ASP359 4.1 133.3 1.0 HA3 D:GLY360 4.2 139.9 1.0 HG22 E:THR267 4.2 144.1 1.0 O1A E:ATP801 4.3 120.5 1.0 C D:GLY360 4.5 139.9 1.0 HE3 E:MET372 4.5 151.1 1.0 OD2 E:ASP328 4.6 155.2 1.0 CG E:ASP328 4.6 155.2 1.0 O2G E:ATP801 4.7 120.5 1.0 HA D:SER356 4.7 133.2 1.0 H D:VAL361 4.9 139.0 1.0 N D:VAL361 4.9 139.0 1.0 OE2 E:GLU329 4.9 158.2 1.0 CA E:THR267 5.0 144.1 1.0 HE1 E:MET372 5.0 151.1 1.0 C D:ASP359 5.0 133.3 1.0 N D:GLY360 5.0 139.9 1.0

K.I.White, Y.A.Khan, K.Qiu, A.Balaji, S.Couoh-Cardel, L.Esquivies, R.A.Pfuetzner, J.Diao, A.T.Brunger. Pre-Fusion Aaa+ Remodeling of Target-Snare Protein Complexes Enables Synaptic Transmission. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39416070
DOI: 10.1101/2024.10.11.617886