Magnesium in PDB 9omq: Nsf, Substrate Free, Hydrolyzing, Class 24

All present enzymatic activity of Nsf, Substrate Free, Hydrolyzing, Class 24:
3.6.4.6;

The binding sites of Magnesium atom in the Nsf, Substrate Free, Hydrolyzing, Class 24 (pdb code 9omq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Nsf, Substrate Free, Hydrolyzing, Class 24, PDB code: 9omq:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Nsf, Substrate Free, Hydrolyzing, Class 24


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nsf, Substrate Free, Hydrolyzing, Class 24 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg803 b:22.1 occ:1.00 O2B B:ATP802 2.0 38.7 1.0 O2G B:ATP802 2.0 38.7 1.0 O3B B:ATP802 2.3 38.7 1.0 PB B:ATP802 2.6 38.7 1.0 PG B:ATP802 2.6 38.7 1.0 OG1 B:THR550 3.1 24.9 1.0 O3A B:ATP802 3.2 38.7 1.0 O3G B:ATP802 3.2 38.7 1.0 HB B:THR550 3.6 24.9 1.0 HG1 B:THR550 3.8 24.9 1.0 H B:THR550 3.9 24.9 1.0 O1B B:ATP802 3.9 38.7 1.0 O1G B:ATP802 3.9 38.7 1.0 CB B:THR550 3.9 24.9 1.0 PA B:ATP802 4.0 38.7 1.0 O1A B:ATP802 4.1 38.7 1.0 OD1 B:ASP604 4.3 30.1 1.0 O2A B:ATP802 4.3 38.7 1.0 N B:THR550 4.7 24.9 1.0 HE2 B:LYS549 4.7 28.3 1.0 HG21 B:THR550 4.7 24.9 1.0 HB2 B:LYS549 4.9 28.3 1.0 H B:LYS549 4.9 28.3 1.0 O B:HOH922 4.9 25.5 1.0 OD2 B:ASP604 4.9 30.1 1.0 CG2 B:THR550 5.0 24.9 1.0 CA B:THR550 5.0 24.9 1.0

Magnesium binding site 2 out of 4 in the Nsf, Substrate Free, Hydrolyzing, Class 24


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nsf, Substrate Free, Hydrolyzing, Class 24 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg803 b:14.8 occ:1.00 O1G C:ATP802 2.5 47.4 1.0 OG1 C:THR550 2.9 37.1 1.0 HG21 C:THR550 3.1 37.1 1.0 PG C:ATP802 3.4 47.4 1.0 HB C:THR550 3.4 37.1 1.0 O3B C:ATP802 3.5 47.4 1.0 CB C:THR550 3.6 37.1 1.0 CG2 C:THR550 3.8 37.1 1.0 O3G C:ATP802 3.8 47.4 1.0 OD2 C:ASP604 4.0 44.7 1.0 HZ3 B:LYS631 4.1 39.2 1.0 O C:HOH934 4.2 24.3 1.0 HG22 C:THR550 4.3 37.1 1.0 HG23 C:THR550 4.4 37.1 1.0 O1A C:ATP802 4.4 47.4 1.0 OD1 C:ASP604 4.5 44.7 1.0 CG C:ASP604 4.6 44.7 1.0 HB3 C:ASP603 4.8 47.4 1.0 O2G C:ATP802 4.8 47.4 1.0 PB C:ATP802 4.8 47.4 1.0 HD2 B:LYS631 4.8 39.2 1.0 NZ B:LYS631 4.9 39.2 1.0 O2B C:ATP802 4.9 47.4 1.0 HZ2 B:LYS631 4.9 39.2 1.0

Magnesium binding site 3 out of 4 in the Nsf, Substrate Free, Hydrolyzing, Class 24


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Nsf, Substrate Free, Hydrolyzing, Class 24 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg803 b:47.5 occ:1.00 O3G E:ATP802 1.8 63.9 1.0 HG1 E:THR550 2.6 66.3 1.0 OG1 E:THR550 2.9 66.3 1.0 PG E:ATP802 3.1 63.9 1.0 O2B E:ATP802 3.2 63.9 1.0 O3B E:ATP802 3.6 63.9 1.0 O2G E:ATP802 3.6 63.9 1.0 HB E:THR550 3.7 66.3 1.0 CB E:THR550 3.9 66.3 1.0 PB E:ATP802 4.0 63.9 1.0 H E:THR550 4.1 66.3 1.0 OD1 E:ASP604 4.1 60.7 1.0 OD2 E:ASP603 4.2 59.9 1.0 HG21 E:THR645 4.2 66.3 1.0 O1G E:ATP802 4.4 63.9 1.0 OD1 E:ASP603 4.4 59.9 1.0 HG22 E:THR645 4.6 66.3 1.0 CG E:ASP604 4.6 60.7 1.0 HE2 E:LYS549 4.7 66.3 1.0 CG E:ASP603 4.7 59.9 1.0 HG21 E:THR550 4.7 66.3 1.0 N E:THR550 4.7 66.3 1.0 HB2 E:LYS549 4.7 66.3 1.0 OD2 E:ASP604 4.8 60.7 1.0 O2A E:ATP802 4.8 63.9 1.0 CA E:THR550 4.8 66.3 1.0 O1B E:ATP802 4.9 63.9 1.0 CG2 E:THR645 4.9 66.3 1.0 CG2 E:THR550 4.9 66.3 1.0

Magnesium binding site 4 out of 4 in the Nsf, Substrate Free, Hydrolyzing, Class 24


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Nsf, Substrate Free, Hydrolyzing, Class 24 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg803 b:68.8 occ:1.00 O2B F:ATP802 2.6 74.1 1.0 OG1 F:THR550 2.9 28.5 1.0 HG1 F:THR550 3.1 28.5 1.0 O1G F:ATP802 3.2 74.1 1.0 O2G F:ATP802 3.3 74.1 1.0 HB2 F:ASP604 3.6 27.0 1.0 PG F:ATP802 3.6 74.1 1.0 PB F:ATP802 3.8 74.1 1.0 O3B F:ATP802 3.9 74.1 1.0 OD2 F:ASP603 3.9 35.8 1.0 H F:ASP604 3.9 27.0 1.0 OD1 F:ASP603 4.1 35.8 1.0 CG F:ASP603 4.1 35.8 1.0 CB F:THR550 4.1 28.5 1.0 HG23 F:THR550 4.3 28.5 1.0 HB F:THR550 4.3 28.5 1.0 HG1 F:THR645 4.4 31.9 1.0 CB F:ASP604 4.5 27.0 1.0 O1B F:ATP802 4.6 74.1 1.0 OD2 F:ASP604 4.6 27.0 1.0 N F:ASP604 4.7 27.0 1.0 CG2 F:THR550 4.8 28.5 1.0 HB3 F:ASP603 4.9 35.8 1.0 CG F:ASP604 4.9 27.0 1.0 O3A F:ATP802 5.0 74.1 1.0

K.I.White, Y.A.Khan, K.Qiu, A.Balaji, S.Couoh-Cardel, L.Esquivies, R.A.Pfuetzner, J.Diao, A.T.Brunger. Pre-Fusion Aaa+ Remodeling of Target-Snare Protein Complexes Enables Synaptic Transmission. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39416070
DOI: 10.1101/2024.10.11.617886