Magnesium in PDB 9pdb: 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22

All present enzymatic activity of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22:
3.6.4.6;

The binding sites of Magnesium atom in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22 (pdb code 9pdb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22, PDB code: 9pdb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg803 b:52.1 occ:1.00 HG1 E:THR550 2.8 63.1 1.0 O3G E:ATP802 3.0 70.3 1.0 O2G E:ATP802 3.0 70.3 1.0 O2B E:ATP802 3.0 70.3 1.0 OD2 E:ASP604 3.1 57.8 1.0 OG1 E:THR550 3.1 63.1 1.0 PG E:ATP802 3.5 70.3 1.0 CG E:ASP604 3.6 57.8 1.0 OD1 E:ASP604 3.6 57.8 1.0 PB E:ATP802 4.0 70.3 1.0 O3B E:ATP802 4.1 70.3 1.0 CB E:THR550 4.3 63.1 1.0 HB E:THR550 4.3 63.1 1.0 HG21 E:THR550 4.3 63.1 1.0 O1B E:ATP802 4.4 70.3 1.0 HB2 E:ASP604 4.7 57.8 1.0 CB E:ASP604 4.8 57.8 1.0 O1G E:ATP802 4.8 70.3 1.0 CG2 E:THR550 4.9 63.1 1.0 H E:THR550 5.0 63.1 1.0 HB2 E:ASP603 5.0 56.6 1.0

Magnesium binding site 2 out of 2 in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 22 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg804 b:50.3 occ:1.00 HG1 E:THR267 2.6 94.1 1.0 O3G E:ATP801 2.8 89.3 1.0 OG1 E:THR267 2.9 94.1 1.0 O2B E:ATP801 2.9 89.3 1.0 OD1 E:ASP328 3.9 94.7 1.0 PG E:ATP801 3.9 89.3 1.0 HG23 E:THR267 3.9 94.1 1.0 O1G E:ATP801 3.9 89.3 1.0 HH22 D:ARG388 4.0 75.0 1.0 HG21 E:THR267 4.1 94.1 1.0 OD2 E:ASP328 4.1 94.7 1.0 CB E:THR267 4.1 94.1 1.0 PB E:ATP801 4.2 89.3 1.0 HH21 D:ARG388 4.2 75.0 1.0 CG2 E:THR267 4.2 94.1 1.0 CG E:ASP328 4.4 94.7 1.0 HA2 D:GLY360 4.4 90.6 1.0 NH2 D:ARG388 4.5 75.0 1.0 O3B E:ATP801 4.5 89.3 1.0 HG2 E:GLU329 4.6 94.3 1.0 HB E:THR267 4.6 94.1 1.0 OE2 E:GLU329 4.7 94.3 1.0 H E:THR267 4.8 94.1 1.0 O1B E:ATP801 4.9 89.3 1.0 O D:ASP359 4.9 80.8 1.0

K.I.White, Y.A.Khan, K.Qiu, A.Balaji, S.Couoh-Cardel, L.Esquivies, R.A.Pfuetzner, J.Diao, A.T.Brunger. Pre-Fusion Aaa+ Remodeling of Target-Snare Protein Complexes Enables Synaptic Transmission. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39416070
DOI: 10.1101/2024.10.11.617886