Magnesium in PDB 9pdd: 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 29

All present enzymatic activity of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 29:
3.6.4.6;

The binding sites of Magnesium atom in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 29 (pdb code 9pdd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 29, PDB code: 9pdd:

Magnesium binding site 1 out of 1 in the 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 29


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 22BIN20S Complex (Nsf-Alphasnap-2:2 Syntaxin-1A:Snap-25), Hydrolyzing, Class 29 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg803 b:68.0 occ:1.00 O2B D:ADP802 2.4 119.2 1.0 PB D:ADP802 3.3 119.2 1.0 HG1 D:THR267 3.4 106.4 1.0 HH22 C:ARG388 3.4 117.9 1.0 HH22 C:ARG385 3.4 120.2 1.0 O1B D:ADP802 3.4 119.2 1.0 OG1 D:THR267 3.5 106.4 1.0 HH12 C:ARG385 3.7 120.2 1.0 NH2 C:ARG388 4.0 117.9 1.0 O3B D:ADP802 4.1 119.2 1.0 NH2 C:ARG385 4.1 120.2 1.0 OE2 D:GLU329 4.3 112.7 1.0 HH12 C:ARG388 4.3 117.9 1.0 HH21 C:ARG388 4.3 117.9 1.0 NH1 C:ARG385 4.4 120.2 1.0 OD2 D:ASP328 4.5 115.7 1.0 O3A D:ADP802 4.7 119.2 1.0 OD1 D:ASP328 4.7 115.7 1.0 HH21 C:ARG385 4.7 120.2 1.0 CZ C:ARG385 4.7 120.2 1.0 H D:THR267 4.7 106.4 1.0 HB3 D:LYS266 4.8 111.3 1.0 CZ C:ARG388 4.8 117.9 1.0 NH1 C:ARG388 4.9 117.9 1.0 O2A D:ADP802 4.9 119.2 1.0 O C:ASP359 4.9 117.7 1.0 CB D:THR267 5.0 106.4 1.0

K.I.White, Y.A.Khan, K.Qiu, A.Balaji, S.Couoh-Cardel, L.Esquivies, R.A.Pfuetzner, J.Diao, A.T.Brunger. Pre-Fusion Aaa+ Remodeling of Target-Snare Protein Complexes Enables Synaptic Transmission. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39416070
DOI: 10.1101/2024.10.11.617886