Magnesium in PDB 9qve: Satellite Tobacco Necrosis Virus-1

The binding sites of Magnesium atom in the Satellite Tobacco Necrosis Virus-1 (pdb code 9qve). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Satellite Tobacco Necrosis Virus-1, PDB code: 9qve:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Satellite Tobacco Necrosis Virus-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Satellite Tobacco Necrosis Virus-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:12.9 occ:1.00 OE1 A:GLU26 2.5 40.0 1.0 HB2 A:GLU26 3.4 44.0 1.0 CD A:GLU26 3.7 39.6 1.0 HB3 A:GLU26 4.0 43.6 1.0 CB A:GLU26 4.1 43.0 1.0 HZ1 A:LYS28 4.3 40.5 1.0 CG A:GLU26 4.5 39.8 1.0 HZ2 A:LYS28 4.6 40.6 1.0 OE2 A:GLU26 4.6 38.2 1.0 NZ A:LYS28 4.9 41.8 1.0 H A:GLU26 4.9 48.1 1.0 HG3 A:GLU26 5.0 40.9 1.0

Magnesium binding site 2 out of 3 in the Satellite Tobacco Necrosis Virus-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Satellite Tobacco Necrosis Virus-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:32.1 occ:0.33 OD2 A:ASP56 2.1 58.1 1.0 CG A:ASP56 2.8 51.7 1.0 OD1 A:ASP56 3.0 48.4 1.0 CB A:ASP56 4.1 40.9 1.0 HA2 A:GLY55 4.1 37.7 1.0 HB2 A:ASP56 4.1 43.6 1.0 H A:ASP56 4.3 43.9 1.0 N A:ASP56 4.4 45.0 1.0 C A:GLY55 4.6 40.2 1.0 CA A:ASP56 4.8 43.6 1.0 HB3 A:ASP56 4.8 43.0 1.0 CA A:GLY55 4.8 38.8 1.0 HA A:ASP56 4.9 44.3 1.0

Magnesium binding site 3 out of 3 in the Satellite Tobacco Necrosis Virus-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Satellite Tobacco Necrosis Virus-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:30.2 occ:0.20 O A:THR139 2.4 43.0 1.0 HA2 A:GLY140 3.3 42.4 1.0 C A:THR139 3.6 42.9 1.0 CA A:GLY140 4.1 41.2 1.0 HB A:THR139 4.3 43.5 1.0 N A:GLY140 4.3 39.0 1.0 HA3 A:GLY140 4.4 41.5 1.0 CA A:THR139 4.7 43.0 1.0 HA A:THR139 4.8 43.0 1.0 CB A:THR139 4.9 43.3 1.0

K.Saunders, S.Shah, H.Peyret, Y.Meshcheriakova, J.Richardson, S.Eltschkner, D.M.Lawson, G.Lomonossoff. The Specificity of Rna Packaging in Isometric Rna Plant Viruses Is Principally Determined By Replication To Be Published.