Atomistry » Magnesium » PDB 1fp6-1g7t » 1g7t
Atomistry »
  Magnesium »
    PDB 1fp6-1g7t »
      1g7t »

Magnesium in PDB 1g7t: X-Ray Structure of Translation Initiation Factor IF2/EIF5B Complexed with Gdpnp

Protein crystallography data

The structure of X-Ray Structure of Translation Initiation Factor IF2/EIF5B Complexed with Gdpnp, PDB code: 1g7t was solved by A.Roll-Mecak, C.Cao, T.E.Dever, S.K.Burley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.00 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 48.799, 53.680, 94.926, 105.17, 94.76, 100.17
R / Rfree (%) 23.1 / 26.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Translation Initiation Factor IF2/EIF5B Complexed with Gdpnp (pdb code 1g7t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of Translation Initiation Factor IF2/EIF5B Complexed with Gdpnp, PDB code: 1g7t:

Magnesium binding site 1 out of 1 in 1g7t

Go back to Magnesium Binding Sites List in 1g7t
Magnesium binding site 1 out of 1 in the X-Ray Structure of Translation Initiation Factor IF2/EIF5B Complexed with Gdpnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Translation Initiation Factor IF2/EIF5B Complexed with Gdpnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:35.4
occ:1.00
O A:HOH844 2.4 25.6 1.0
O1A A:GNP601 2.6 27.6 1.0
O2B A:GNP601 2.8 25.2 1.0
OG1 A:THR19 2.9 20.8 1.0
O3G A:GNP601 3.0 29.3 1.0
N3B A:GNP601 3.2 27.9 1.0
O A:HOH934 3.2 26.8 1.0
CB A:THR19 3.3 23.4 1.0
O A:HOH895 3.4 57.1 1.0
PB A:GNP601 3.5 25.6 1.0
PA A:GNP601 3.6 27.3 1.0
PG A:GNP601 3.8 29.6 1.0
O3A A:GNP601 3.8 26.1 1.0
O2A A:GNP601 4.0 28.2 1.0
CG2 A:THR19 4.0 24.1 1.0
O A:HOH968 4.1 43.7 1.0
O1G A:GNP601 4.1 31.1 1.0
CA A:THR19 4.5 22.7 1.0
N A:THR19 4.5 22.5 1.0
O1B A:GNP601 4.9 26.1 1.0

Reference:

A.Roll-Mecak, C.Cao, T.E.Dever, S.K.Burley. X-Ray Structures of the Universal Translation Initiation Factor IF2/EIF5B: Conformational Changes on Gdp and Gtp Binding. Cell(Cambridge,Mass.) V. 103 781 2000.
ISSN: ISSN 0092-8674
PubMed: 11114334
DOI: 10.1016/S0092-8674(00)00181-1
Page generated: Tue Aug 13 03:40:35 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy