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Magnesium in PDB 1kvk: The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease

Enzymatic activity of The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease

All present enzymatic activity of The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease:
2.7.1.36;

Protein crystallography data

The structure of The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease, PDB code: 1kvk was solved by Z.Fu, M.Wang, D.Potter, H.M.Mizioko, J.J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.50 / 2.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.630, 118.700, 42.840, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 26.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease (pdb code 1kvk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease, PDB code: 1kvk:

Magnesium binding site 1 out of 1 in 1kvk

Go back to Magnesium Binding Sites List in 1kvk
Magnesium binding site 1 out of 1 in the The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg536

b:44.8
occ:1.00
 OG A:SER146 2.8 35.5 1.0
O3G A:ATP535 2.8 56.1 1.0
OE2 A:GLU193 2.8 39.1 1.0
O1B A:ATP535 2.9 51.5 1.0
OD1 A:ASP204 3.4 31.5 1.0
N A:ALA147 3.5 31.3 1.0
CA A:GLY144 3.6 26.2 1.0
NE2 A:HIS197 3.6 59.8 1.0
CD A:GLU193 3.7 39.8 1.0
CE1 A:HIS197 3.8 59.5 1.0
OE1 A:GLU193 3.8 38.6 1.0
CG A:ASP204 3.9 31.2 1.0
C A:GLY144 3.9 27.7 1.0
CB A:SER146 3.9 31.2 1.0
CB A:ALA147 3.9 27.5 1.0
N A:SER146 4.0 31.1 1.0
PB A:ATP535 4.0 55.4 1.0
CB A:ASP204 4.0 29.6 1.0
O3B A:ATP535 4.1 56.0 1.0
O3A A:ATP535 4.1 53.9 1.0
PG A:ATP535 4.1 55.5 1.0
O A:GLY144 4.1 29.4 1.0
C A:SER146 4.2 32.4 1.0
CA A:SER146 4.3 32.1 1.0
CA A:ALA147 4.3 30.0 1.0
CD2 A:HIS197 4.5 59.5 1.0
N A:SER145 4.5 28.2 1.0
O1G A:ATP535 4.7 51.4 1.0
ND1 A:HIS197 4.7 59.4 1.0
OD2 A:ASP204 4.7 37.0 1.0
N A:GLY144 4.8 25.8 1.0
O A:HOH1035 4.9 69.3 1.0

Reference:

Z.Fu, M.Wang, D.Potter, H.M.Mizioko, J.J.Kim. The Structure of A Binary Complex Between A Mammalian Mevalonate Kinase and Atp: Insights Into the Reaction Mechanism and Human Inherited Disease J.Biol.Chem. V. 277 18134 2002.
ISSN: ISSN 0021-9258
PubMed: 11877411
DOI: 10.1074/JBC.M200912200
Page generated: Tue Aug 13 08:09:16 2024

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