Atomistry » Magnesium » PDB 1l3r-1lny » 1lkx
Atomistry »
  Magnesium »
    PDB 1l3r-1lny »
      1lkx »

Magnesium in PDB 1lkx: Motor Domain of Myoe, A Class-I Myosin

Protein crystallography data

The structure of Motor Domain of Myoe, A Class-I Myosin, PDB code: 1lkx was solved by M.Kollmar, U.Durrwang, W.Kliche, D.J.Manstein, F.J.Kull, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.818, 143.667, 236.050, 90.00, 94.86, 90.00
R / Rfree (%) 22.8 / 27.3

Other elements in 1lkx:

The structure of Motor Domain of Myoe, A Class-I Myosin also contains other interesting chemical elements:

Vanadium (V) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Motor Domain of Myoe, A Class-I Myosin (pdb code 1lkx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Motor Domain of Myoe, A Class-I Myosin, PDB code: 1lkx:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1lkx

Go back to Magnesium Binding Sites List in 1lkx
Magnesium binding site 1 out of 4 in the Motor Domain of Myoe, A Class-I Myosin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Motor Domain of Myoe, A Class-I Myosin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg790

b:22.2
occ:1.00
OG1 A:THR108 2.1 25.4 1.0
OG A:SER158 2.4 33.5 1.0
O1B A:ADP791 2.4 28.4 1.0
O2 A:VO4792 2.4 27.9 1.0
O A:HOH805 2.6 14.3 1.0
CB A:THR108 2.9 28.9 1.0
O A:HOH808 3.1 10.9 1.0
O2A A:ADP791 3.1 28.1 1.0
PB A:ADP791 3.2 29.4 1.0
O2B A:ADP791 3.2 29.4 1.0
N A:SER158 3.5 33.9 1.0
CB A:SER158 3.5 34.5 1.0
V A:VO4792 3.6 30.3 1.0
CG2 A:THR108 3.8 27.6 1.0
O3A A:ADP791 3.9 28.5 1.0
PA A:ADP791 3.9 28.1 1.0
CA A:SER158 4.1 34.2 1.0
CA A:THR108 4.1 30.6 1.0
N A:THR108 4.1 29.9 1.0
ND2 A:ASN148 4.3 32.9 1.0
O1A A:ADP791 4.3 27.1 1.0
C A:SER157 4.4 34.1 1.0
O A:HOH798 4.4 38.6 1.0
CA A:SER157 4.5 35.0 1.0
ND2 A:ASN154 4.5 38.2 1.0
O3B A:ADP791 4.5 28.9 1.0
O3 A:VO4792 4.6 29.9 1.0
O4 A:VO4792 4.7 33.2 1.0
N A:SER157 4.7 37.5 1.0
OD1 A:ASP386 4.8 51.4 1.0
O1 A:VO4792 4.9 31.4 1.0

Magnesium binding site 2 out of 4 in 1lkx

Go back to Magnesium Binding Sites List in 1lkx
Magnesium binding site 2 out of 4 in the Motor Domain of Myoe, A Class-I Myosin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Motor Domain of Myoe, A Class-I Myosin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg793

b:22.8
occ:1.00
OG1 B:THR108 2.3 30.6 1.0
O3 B:VO4795 2.4 41.1 1.0
O1B B:ADP794 2.5 40.9 1.0
OG B:SER158 2.6 37.7 1.0
O B:HOH797 2.6 19.7 1.0
O B:HOH796 2.8 14.6 1.0
O2A B:ADP794 2.9 38.3 1.0
CB B:THR108 3.0 32.3 1.0
PB B:ADP794 3.1 40.2 1.0
O3A B:ADP794 3.3 39.3 1.0
O2B B:ADP794 3.3 40.1 1.0
V B:VO4795 3.5 43.2 1.0
N B:SER158 3.5 38.0 1.0
PA B:ADP794 3.5 38.9 1.0
CB B:SER158 3.7 37.8 1.0
CG2 B:THR108 3.9 32.8 1.0
O1A B:ADP794 4.0 36.8 1.0
O1 B:VO4795 4.0 39.9 1.0
CA B:THR108 4.2 33.5 1.0
N B:THR108 4.2 33.4 1.0
CA B:SER158 4.2 37.4 1.0
ND2 B:ASN154 4.2 44.4 1.0
CA B:SER157 4.3 38.8 1.0
C B:SER157 4.4 38.5 1.0
ND2 B:ASN148 4.4 38.9 1.0
O4 B:VO4795 4.4 41.8 1.0
O3B B:ADP794 4.6 38.1 1.0
N B:SER157 4.6 40.4 1.0
OD1 B:ASP386 4.9 53.0 1.0
O2 B:VO4795 4.9 38.8 1.0
O5' B:ADP794 5.0 39.2 1.0

Magnesium binding site 3 out of 4 in 1lkx

Go back to Magnesium Binding Sites List in 1lkx
Magnesium binding site 3 out of 4 in the Motor Domain of Myoe, A Class-I Myosin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Motor Domain of Myoe, A Class-I Myosin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg890

b:8.4
occ:1.00
OG1 C:THR108 2.1 29.4 1.0
O C:HOH909 2.2 39.4 1.0
OG C:SER158 2.5 34.6 1.0
O2 C:VO4892 2.5 26.0 1.0
O1B C:ADP891 2.6 19.0 1.0
O2B C:ADP891 2.7 15.8 1.0
O C:HOH897 2.9 28.6 1.0
PB C:ADP891 3.0 15.0 1.0
CB C:THR108 3.0 31.8 1.0
V C:VO4892 3.4 27.7 1.0
CB C:SER158 3.5 35.0 1.0
O2A C:ADP891 3.6 19.2 1.0
N C:SER158 3.6 35.8 1.0
O3A C:ADP891 3.6 19.2 1.0
N C:THR108 4.0 31.1 1.0
PA C:ADP891 4.0 20.2 1.0
CG2 C:THR108 4.1 32.9 1.0
CA C:THR108 4.1 32.6 1.0
CA C:SER158 4.2 35.0 1.0
OD1 C:ASP386 4.3 53.0 1.0
O1A C:ADP891 4.4 22.1 1.0
O1 C:VO4892 4.4 28.6 1.0
O3B C:ADP891 4.4 14.2 1.0
C C:SER157 4.5 36.1 1.0
ND2 C:ASN154 4.5 41.8 1.0
CA C:SER157 4.6 36.6 1.0
O3 C:VO4892 4.6 29.2 1.0
O4 C:VO4892 4.6 27.9 1.0
OD2 C:ASP386 4.7 53.0 1.0
ND2 C:ASN148 4.8 30.3 1.0
N C:SER157 4.9 38.6 1.0
CG C:ASP386 5.0 51.0 1.0

Magnesium binding site 4 out of 4 in 1lkx

Go back to Magnesium Binding Sites List in 1lkx
Magnesium binding site 4 out of 4 in the Motor Domain of Myoe, A Class-I Myosin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Motor Domain of Myoe, A Class-I Myosin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg893

b:5.4
occ:1.00
O D:HOH906 2.3 14.2 1.0
OG1 D:THR108 2.3 33.3 1.0
O3 D:VO4895 2.4 35.5 1.0
OG D:SER158 2.4 38.6 1.0
O3B D:ADP894 2.6 35.8 1.0
O2B D:ADP894 2.9 40.6 1.0
PB D:ADP894 3.0 37.3 1.0
O D:HOH905 3.2 30.2 1.0
CB D:THR108 3.2 34.7 1.0
O3A D:ADP894 3.2 38.1 1.0
V D:VO4895 3.2 36.6 1.0
CB D:SER158 3.4 37.2 1.0
N D:SER158 3.4 38.0 1.0
O2A D:ADP894 3.6 37.6 1.0
PA D:ADP894 3.9 37.3 1.0
CA D:SER158 4.0 37.7 1.0
O1 D:VO4895 4.0 38.1 1.0
N D:THR108 4.2 32.1 1.0
CG2 D:THR108 4.2 35.3 1.0
CA D:THR108 4.3 34.5 1.0
C D:SER157 4.3 37.2 1.0
CA D:SER157 4.4 38.1 1.0
O1A D:ADP894 4.4 38.4 1.0
O1B D:ADP894 4.5 39.1 1.0
O4 D:VO4895 4.5 36.5 1.0
ND2 D:ASN154 4.5 43.2 1.0
O2 D:VO4895 4.6 36.5 1.0
ND2 D:ASN148 4.6 33.6 1.0
OD1 D:ASP386 4.6 55.5 1.0
N D:SER157 4.8 41.0 1.0
OD2 D:ASP386 4.9 55.6 1.0

Reference:

M.Kollmar, U.Durrwang, W.Kliche, D.J.Manstein, F.J.Kull. Crystal Structure of the Motor Domain of A Class-I Myosin. Embo J. V. 21 2517 2002.
ISSN: ISSN 0261-4189
PubMed: 12032065
DOI: 10.1093/EMBOJ/21.11.2517
Page generated: Tue Aug 13 08:31:46 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy