Atomistry » Magnesium » PDB 1n6k-1ngg » 1nbm
Atomistry »
  Magnesium »
    PDB 1n6k-1ngg »
      1nbm »

Magnesium in PDB 1nbm: The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan

Enzymatic activity of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan

All present enzymatic activity of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan:
3.6.1.34;

Protein crystallography data

The structure of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan, PDB code: 1nbm was solved by G.L.Orriss, A.G.W.Leslie, K.Braig, J.E.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 281.000, 106.600, 138.800, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 29.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan (pdb code 1nbm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan, PDB code: 1nbm:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 1nbm

Go back to Magnesium Binding Sites List in 1nbm
Magnesium binding site 1 out of 5 in the The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:43.8
occ:1.00
 OG1 A:THR176 1.6 53.2 1.0
O2G A:ATP600 1.9 52.5 1.0
OE1 A:GLN208 2.8 0.0 1.0
CB A:THR176 2.9 45.5 1.0
O2B A:ATP600 3.2 29.5 1.0
PG A:ATP600 3.4 68.3 1.0
OD1 A:ASP269 3.4 83.1 1.0
OD2 A:ASP269 3.5 49.9 1.0
CG2 A:THR176 3.6 47.5 1.0
CG A:ASP269 3.8 59.6 1.0
O3B A:ATP600 4.0 58.0 1.0
CD A:GLN208 4.1 92.2 1.0
CA A:THR176 4.1 42.5 1.0
O3G A:ATP600 4.2 45.9 1.0
O1G A:ATP600 4.2 62.3 1.0
PB A:ATP600 4.3 62.6 1.0
N A:THR176 4.3 51.1 1.0
OH A:TYR203 4.5 55.0 1.0
O2A A:ATP600 4.7 32.2 1.0
OD2 A:ASP270 4.8 92.5 1.0
NE2 A:GLN208 4.9 96.1 1.0
O1A A:ATP600 5.0 48.9 1.0

Magnesium binding site 2 out of 5 in 1nbm

Go back to Magnesium Binding Sites List in 1nbm
Magnesium binding site 2 out of 5 in the The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:25.9
occ:1.00
 OG1 B:THR176 1.7 46.8 1.0
O2G B:ATP600 2.1 65.1 1.0
O2B B:ATP600 2.6 49.8 1.0
CB B:THR176 2.9 38.7 1.0
OE1 B:GLN208 3.1 0.0 1.0
OD1 B:ASP269 3.4 71.2 1.0
PG B:ATP600 3.6 42.3 1.0
CG2 B:THR176 3.6 18.8 1.0
O B:HOH631 3.8 36.8 1.0
PB B:ATP600 3.8 58.9 1.0
OD2 B:ASP269 3.9 50.2 1.0
O3B B:ATP600 3.9 54.0 1.0
CG B:ASP269 4.0 60.3 1.0
CA B:THR176 4.1 25.0 1.0
N B:THR176 4.3 41.3 1.0
CD B:GLN208 4.3 87.5 1.0
O2A B:ATP600 4.4 49.2 1.0
O3G B:ATP600 4.5 31.7 1.0
O1G B:ATP600 4.5 47.9 1.0
O B:HOH610 4.8 32.3 1.0
O1B B:ATP600 4.8 54.3 1.0
OH B:TYR203 4.9 23.6 1.0
O3A B:ATP600 5.0 49.2 1.0

Magnesium binding site 3 out of 5 in 1nbm

Go back to Magnesium Binding Sites List in 1nbm
Magnesium binding site 3 out of 5 in the The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:52.0
occ:1.00
 OG1 C:THR176 1.6 59.0 1.0
O2G C:ATP600 1.8 56.3 1.0
O2B C:ATP600 2.8 43.1 1.0
CB C:THR176 2.8 38.9 1.0
PG C:ATP600 3.3 61.2 1.0
OD2 C:ASP269 3.5 75.8 1.0
CG2 C:THR176 3.5 41.0 1.0
O3B C:ATP600 3.8 56.9 1.0
OD1 C:ASP269 3.9 88.8 1.0
PB C:ATP600 3.9 55.3 1.0
OE1 C:GLN208 4.0 52.7 1.0
CA C:THR176 4.0 23.6 1.0
CG C:ASP269 4.1 75.4 1.0
O1G C:ATP600 4.1 53.6 1.0
N C:THR176 4.2 13.3 1.0
O3G C:ATP600 4.2 28.3 1.0
O2A C:ATP600 4.7 35.5 1.0
OH C:TYR203 4.7 24.5 1.0
CD C:GLN208 4.9 51.2 1.0
O1B C:ATP600 4.9 45.0 1.0
O1A C:ATP600 5.0 27.0 1.0

Magnesium binding site 4 out of 5 in 1nbm

Go back to Magnesium Binding Sites List in 1nbm
Magnesium binding site 4 out of 5 in the The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:57.8
occ:1.00
 OG1 D:THR163 1.6 61.8 1.0
O D:HOH603 1.7 40.0 1.0
O2B D:ADP600 1.7 55.5 1.0
CB D:THR163 2.9 49.2 1.0
PB D:ADP600 3.2 47.6 1.0
O D:HOH610 3.6 44.7 1.0
CG2 D:THR163 3.8 30.2 1.0
N D:THR163 3.9 32.2 1.0
O3B D:ADP600 3.9 59.5 1.0
CA D:THR163 3.9 47.9 1.0
O1B D:ADP600 4.1 25.7 1.0
OD1 D:ASP256 4.1 43.3 1.0
O3A D:ADP600 4.1 50.4 1.0
OE1 D:GLU188 4.3 54.5 1.0
O2A D:ADP600 4.4 48.9 1.0
OE1 D:GLU192 4.4 52.6 1.0
NH1 D:ARG189 4.4 26.8 1.0
OD2 D:ASP256 4.5 55.0 1.0
OE2 D:GLU192 4.5 48.8 1.0
O1A D:ADP600 4.5 36.4 1.0
PA D:ADP600 4.6 36.3 1.0
CG D:ASP256 4.7 48.3 1.0
NH1 C:ARG373 4.8 36.2 1.0
CD D:GLU188 4.8 45.6 1.0
CD D:GLU192 4.8 45.5 1.0
CB D:LYS162 4.9 9.2 1.0
CE D:LYS162 4.9 14.9 1.0
NZ D:LYS162 5.0 26.5 1.0

Magnesium binding site 5 out of 5 in 1nbm

Go back to Magnesium Binding Sites List in 1nbm
Magnesium binding site 5 out of 5 in the The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:28.8
occ:1.00
 OG1 F:THR163 1.6 52.5 1.0
O2G F:ATP600 1.9 56.4 1.0
O2B F:ATP600 2.3 54.3 1.0
CB F:THR163 2.8 45.9 1.0
PG F:ATP600 3.3 38.8 1.0
OE1 F:GLU188 3.3 61.7 1.0
OE2 F:GLU192 3.4 38.0 1.0
PB F:ATP600 3.5 38.0 1.0
CG2 F:THR163 3.7 53.2 1.0
O3B F:ATP600 3.7 49.0 1.0
CA F:THR163 3.9 37.4 1.0
OD2 F:ASP256 4.0 51.1 1.0
N F:THR163 4.0 34.1 1.0
O2A F:ATP600 4.0 43.5 1.0
OE1 F:GLU192 4.0 53.4 1.0
NH1 F:ARG189 4.1 27.4 1.0
CD F:GLU192 4.1 36.7 1.0
O1G F:ATP600 4.2 42.8 1.0
O3G F:ATP600 4.3 36.4 1.0
OD1 F:ASP256 4.4 51.8 1.0
CD F:GLU188 4.4 46.3 1.0
O1B F:ATP600 4.5 36.8 1.0
PA F:ATP600 4.6 23.4 1.0
O3A F:ATP600 4.6 25.6 1.0
O1A F:ATP600 4.6 28.9 1.0
CG F:ASP256 4.7 55.0 1.0
NH1 B:ARG373 5.0 25.2 1.0

Reference:

G.L.Orriss, A.G.Leslie, K.Braig, J.E.Walker. Bovine F1-Atpase Covalently Inhibited with 4-Chloro-7-Nitrobenzofurazan: the Structure Provides Further Support For A Rotary Catalytic Mechanism. Structure V. 6 831 1998.
ISSN: ISSN 0969-2126
PubMed: 9687365
DOI: 10.1016/S0969-2126(98)00085-9
Page generated: Sun Aug 10 01:35:28 2025

Last articles

Mn in 5CNQ
Mn in 5CL0
Mn in 5CKX
Mn in 5CKV
Mn in 5CGV
Mn in 5CG9
Mn in 5CG8
Mn in 5CFU
Mn in 5CFT
Mn in 5CFS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy