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Magnesium in PDB 1nv7: Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm)

Enzymatic activity of Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm)

All present enzymatic activity of Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm):
3.1.3.11;

Protein crystallography data

The structure of Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm), PDB code: 1nv7 was solved by J.Choe, C.V.Iancu, H.J.Fromm, R.B.Honzatko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 2.15
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 59.950, 166.150, 79.290, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 25.1

Other elements in 1nv7:

The structure of Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm) also contains other interesting chemical elements:

Thallium (Tl) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm) (pdb code 1nv7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm), PDB code: 1nv7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1nv7

Go back to Magnesium Binding Sites List in 1nv7
Magnesium binding site 1 out of 2 in the Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg3341

b:29.9
occ:1.00
 OD2 A:ASP1121 1.9 10.6 1.0
O2 A:PO43434 2.1 35.4 1.0
OD2 A:ASP1118 2.1 25.4 1.0
OE2 A:GLU1280 2.1 34.1 1.0
OE1 A:GLU1097 2.3 39.6 1.0
O4 A:PO43434 2.5 35.1 1.0
P A:PO43434 2.7 35.4 1.0
CG A:ASP1118 3.0 19.2 1.0
CG A:ASP1121 3.1 21.6 1.0
CD A:GLU1280 3.2 31.9 1.0
OD1 A:ASP1118 3.3 20.4 1.0
CD A:GLU1097 3.3 36.5 1.0
O3 A:PO43434 3.5 35.2 1.0
OE2 A:GLU1097 3.7 49.6 1.0
TL A:TL3352 3.7 0.3 1.0
C1 A:F6P3336 3.8 17.8 1.0
CB A:ASP1121 3.8 19.2 1.0
CG A:GLU1280 3.9 22.8 1.0
O1 A:F6P3336 3.9 19.2 1.0
O1 A:PO43434 4.0 35.4 1.0
TL A:TL3351 4.1 0.2 1.0
OD1 A:ASP1121 4.1 12.2 1.0
TL A:TL3354 4.1 0.1 1.0
OE1 A:GLU1280 4.2 31.2 1.0
CA A:ASP1121 4.3 18.9 1.0
CB A:ASP1118 4.3 17.8 1.0
CG A:GLU1097 4.7 22.5 1.0
O A:LEU1120 4.9 23.3 1.0
C2 A:F6P3336 5.0 17.6 1.0

Magnesium binding site 2 out of 2 in 1nv7

Go back to Magnesium Binding Sites List in 1nv7
Magnesium binding site 2 out of 2 in the Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fructose-1,6-Bisphosphatase Complex with Amp, Magnesium, Fructose-6- Phosphate, Phosphate and Thallium (20 Mm) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg4341

b:24.7
occ:1.00
 OE1 B:GLU2280 1.8 23.4 1.0
OD2 B:ASP2121 1.8 9.8 1.0
OD2 B:ASP2118 2.0 25.3 1.0
O4 B:PO44434 2.1 33.8 1.0
OE1 B:GLU2097 2.2 32.2 1.0
O3 B:PO44434 2.3 33.3 1.0
P B:PO44434 2.7 33.7 1.0
O1 B:F6P4336 3.0 19.1 1.0
CG B:ASP2121 3.0 23.7 1.0
CD B:GLU2280 3.1 26.0 1.0
CG B:ASP2118 3.1 19.8 1.0
CD B:GLU2097 3.2 35.2 1.0
TL B:TL4352 3.5 95.1 1.0
OD1 B:ASP2118 3.5 17.4 1.0
OE2 B:GLU2097 3.6 50.5 1.0
O2 B:PO44434 3.6 33.4 1.0
CB B:ASP2121 3.8 19.3 1.0
O1 B:PO44434 3.8 33.8 1.0
TL B:TL4351 3.9 0.1 1.0
CG B:GLU2280 3.9 16.0 1.0
OE2 B:GLU2280 4.0 16.0 1.0
TL B:TL4354 4.0 0.9 1.0
OD1 B:ASP2121 4.0 16.6 1.0
C1 B:F6P4336 4.2 17.7 1.0
CA B:ASP2121 4.3 15.6 1.0
CB B:ASP2118 4.3 15.8 1.0
CG B:GLU2097 4.6 25.3 1.0

Reference:

J.Y.Choe, S.W.Nelson, H.J.Fromm, R.B.Honzatko. Interaction of Tl+ with Product Complexes of Fructose-1,6-Bisphosphatase J.Biol.Chem. V. 278 16008 2003.
ISSN: ISSN 0021-9258
PubMed: 12595529
DOI: 10.1074/JBC.M212394200
Page generated: Tue Aug 13 10:26:59 2024

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