Atomistry » Magnesium » PDB 1ofh-1oyj » 1oxh
Atomistry »
  Magnesium »
    PDB 1ofh-1oyj »
      1oxh »

Magnesium in PDB 1oxh: The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form

Enzymatic activity of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form

All present enzymatic activity of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form:
2.3.1.41;

Protein crystallography data

The structure of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form, PDB code: 1oxh was solved by A.C.Price, C.O.Rock, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.19 / 2.09
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 61.520, 71.646, 96.100, 89.83, 83.09, 69.15
R / Rfree (%) 20.8 / 23.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form (pdb code 1oxh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form, PDB code: 1oxh:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1oxh

Go back to Magnesium Binding Sites List in 1oxh
Magnesium binding site 1 out of 4 in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:22.4
occ:1.00
 OE1 A:GLU346 2.4 35.0 1.0
OD1 A:ASN301 2.7 32.4 1.0
O A:ASN392 2.7 39.4 1.0
O A:ASN301 2.7 32.9 1.0
OG A:SER391 2.8 36.5 1.0
O A:ALA302 3.1 35.1 1.0
CD A:GLU346 3.4 36.2 1.0
C A:ALA302 3.5 35.1 1.0
N A:ASN392 3.5 37.5 1.0
C A:ASN301 3.5 32.5 1.0
C A:ASN392 3.6 38.9 1.0
CG A:ASN301 3.7 30.0 1.0
CB A:GLU346 3.7 35.4 1.0
N A:HIS303 3.8 35.7 1.0
CG A:GLU346 3.9 35.1 1.0
CB A:SER391 4.0 35.9 1.0
C A:SER391 4.0 36.4 1.0
O A:HOH925 4.0 36.3 1.0
CB A:ASN301 4.1 29.9 1.0
CA A:ASN392 4.1 38.2 1.0
CA A:SER391 4.1 36.3 1.0
N A:ALA302 4.2 33.5 1.0
CA A:HIS303 4.3 36.7 1.0
CA A:ALA302 4.3 34.9 1.0
OE2 A:GLU346 4.4 33.7 1.0
CA A:ASN301 4.4 30.8 1.0
CG2 A:THR393 4.5 40.3 1.0
O A:HOH905 4.8 29.1 1.0
N A:THR393 4.8 40.0 1.0
ND2 A:ASN301 4.8 29.1 1.0
NZ A:LYS332 4.8 30.0 1.0
CB A:ASN392 4.8 37.7 1.0
O A:SER391 4.9 35.6 1.0

Magnesium binding site 2 out of 4 in 1oxh

Go back to Magnesium Binding Sites List in 1oxh
Magnesium binding site 2 out of 4 in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:29.9
occ:1.00
 OE1 B:GLU346 2.5 36.2 1.0
OG B:SER391 2.5 37.0 1.0
O B:ASN392 2.7 39.4 1.0
OD1 B:ASN301 2.7 39.8 1.0
O B:ASN301 2.8 38.1 1.0
O B:ALA302 2.9 40.3 1.0
N B:ASN392 3.4 37.7 1.0
C B:ALA302 3.5 40.7 1.0
CD B:GLU346 3.5 36.5 1.0
C B:ASN301 3.5 38.7 1.0
C B:ASN392 3.6 38.9 1.0
CB B:GLU346 3.7 36.2 1.0
CG B:ASN301 3.7 37.6 1.0
CB B:SER391 3.8 36.0 1.0
C B:SER391 3.9 36.4 1.0
CG B:GLU346 3.9 35.6 1.0
O B:HOH936 4.0 37.0 1.0
CA B:SER391 4.0 36.5 1.0
CA B:ASN392 4.0 38.3 1.0
N B:HIS303 4.1 40.4 1.0
N B:ALA302 4.1 39.6 1.0
CB B:ASN301 4.1 37.9 1.0
CA B:ALA302 4.3 40.9 1.0
CA B:HIS303 4.4 41.1 1.0
CA B:ASN301 4.4 37.8 1.0
OE2 B:GLU346 4.6 34.2 1.0
CG2 B:THR393 4.6 41.0 1.0
O B:HOH915 4.8 29.0 1.0
CB B:ASN392 4.8 37.9 1.0
N B:THR393 4.8 40.2 1.0
O B:SER391 4.8 36.5 1.0
ND2 B:ASN301 4.9 41.5 1.0
NZ B:LYS332 5.0 30.3 1.0

Magnesium binding site 3 out of 4 in 1oxh

Go back to Magnesium Binding Sites List in 1oxh
Magnesium binding site 3 out of 4 in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg903

b:25.1
occ:1.00
 OE1 C:GLU346 2.5 35.1 1.0
OD1 C:ASN301 2.6 38.5 1.0
O C:ASN301 2.6 36.0 1.0
O C:ASN392 2.6 39.6 1.0
OG C:SER391 2.8 36.2 1.0
O C:ALA302 3.0 39.6 1.0
N C:ASN392 3.4 38.1 1.0
C C:ALA302 3.5 39.1 1.0
CD C:GLU346 3.5 36.1 1.0
C C:ASN301 3.5 36.9 1.0
C C:ASN392 3.6 39.0 1.0
CG C:ASN301 3.7 37.0 1.0
CB C:GLU346 3.8 35.2 1.0
N C:HIS303 3.9 39.4 1.0
CB C:SER391 4.0 36.3 1.0
C C:SER391 4.0 36.5 1.0
CG C:GLU346 4.0 35.1 1.0
O C:HOH926 4.0 35.9 1.0
CA C:ASN392 4.1 38.2 1.0
CA C:SER391 4.1 36.2 1.0
CB C:ASN301 4.1 36.0 1.0
CA C:HIS303 4.2 40.0 1.0
N C:ALA302 4.3 37.9 1.0
CA C:ALA302 4.3 39.1 1.0
CA C:ASN301 4.4 35.3 1.0
CG2 C:THR393 4.5 40.6 1.0
OE2 C:GLU346 4.5 33.6 1.0
O C:HOH907 4.6 29.9 1.0
N C:THR393 4.7 40.0 1.0
CB C:ASN392 4.8 37.8 1.0
NZ C:LYS332 4.8 30.0 1.0
ND2 C:ASN301 4.8 37.6 1.0
O C:SER391 4.9 35.9 1.0

Magnesium binding site 4 out of 4 in 1oxh

Go back to Magnesium Binding Sites List in 1oxh
Magnesium binding site 4 out of 4 in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, Triclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg904

b:21.4
occ:1.00
 OE1 D:GLU346 2.5 35.8 1.0
OD1 D:ASN301 2.6 37.5 1.0
O D:ASN392 2.6 38.7 1.0
OG D:SER391 2.6 36.7 1.0
O D:ALA302 2.7 38.5 1.0
O D:ASN301 2.8 33.8 1.0
N D:ASN392 3.3 37.3 1.0
CD D:GLU346 3.4 36.3 1.0
C D:ALA302 3.5 37.8 1.0
C D:ASN301 3.5 34.5 1.0
C D:ASN392 3.5 38.9 1.0
CG D:ASN301 3.6 34.4 1.0
CB D:GLU346 3.7 35.7 1.0
CB D:SER391 3.8 36.2 1.0
CG D:GLU346 3.9 35.6 1.0
C D:SER391 3.9 36.3 1.0
CA D:ASN392 4.0 38.2 1.0
CB D:ASN301 4.0 34.3 1.0
CA D:SER391 4.0 36.4 1.0
N D:HIS303 4.0 38.2 1.0
O D:HOH938 4.0 36.4 1.0
N D:ALA302 4.1 35.0 1.0
CA D:ALA302 4.3 37.1 1.0
CA D:HIS303 4.3 38.8 1.0
CA D:ASN301 4.4 35.0 1.0
OE2 D:GLU346 4.5 34.4 1.0
CG2 D:THR393 4.5 40.7 1.0
N D:THR393 4.7 40.0 1.0
O D:HOH918 4.7 28.5 1.0
CB D:ASN392 4.8 38.0 1.0
O D:SER391 4.8 36.2 1.0
ND2 D:ASN301 4.8 35.4 1.0
NZ D:LYS332 4.9 30.2 1.0

Reference:

A.C.Price, C.O.Rock, S.W.White. The 1.3-Angstrom-Resolution Crystal Structure of Beta-Ketoacyl-Acyl Carrier Protein Synthase II From Streptococcus Pneumoniae. J.Bacteriol. V. 185 4136 2003.
ISSN: ISSN 0021-9193
PubMed: 12837788
DOI: 10.1128/JB.185.14.4136-4143.2003
Page generated: Tue Aug 13 10:44:19 2024

Last articles

Cl in 4BIS
Cl in 4BH5
Cl in 4BDT
Cl in 4BG9
Cl in 4BG8
Cl in 4BFT
Cl in 4BFD
Cl in 4BEU
Cl in 4BEL
Cl in 4BE2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy