Magnesium in PDB 1oxu: Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxu was solved by G.Verdon, S.V.Albers, B.W.Dijkstra, A.J.Driessen, A.M.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.51 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.402, 149.045, 176.422, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 25.6

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus also contains other interesting chemical elements:

Iodine

(I)

60 atoms

The binding sites of Magnesium atom in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus (pdb code 1oxu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxu:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1502 b:21.7 occ:1.00 O2B A:ADP1486 1.9 15.1 1.0 O A:HOH3014 2.0 17.1 1.0 OG1 A:THR45 2.2 12.5 1.0 O A:HOH3094 2.2 17.7 1.0 O A:HOH3064 2.2 16.1 1.0 O A:HOH3093 2.2 24.5 1.0 CB A:THR45 3.1 11.2 1.0 PB A:ADP1486 3.3 18.3 1.0 O3B A:ADP1486 3.5 22.2 1.0 N A:THR45 3.8 12.4 1.0 OE2 A:GLU166 3.9 10.6 1.0 CA A:THR45 4.0 10.4 1.0 O2A A:ADP1486 4.1 20.8 1.0 OD2 A:ASP165 4.1 7.2 1.0 O1B A:ADP1486 4.2 15.1 1.0 OD1 A:ASP165 4.2 14.1 1.0 CG2 A:THR45 4.2 17.3 1.0 O3A A:ADP1486 4.4 24.8 1.0 O A:HOH3273 4.6 72.7 1.0 O A:HOH3219 4.6 34.8 1.0 CG A:ASP165 4.7 24.2 1.0 PA A:ADP1486 4.7 21.1 1.0 NE2 A:GLN89 4.7 0.6 1.0 O A:HOH3157 4.8 30.7 1.0 CB A:LYS44 4.8 8.6 1.0 O A:HOH3163 4.8 29.5 1.0 O A:HOH3003 4.8 22.0 1.0 CE A:LYS44 4.8 17.7 1.0 C A:LYS44 4.9 23.5 1.0 NZ A:LYS44 4.9 4.5 1.0 CD A:GLU166 4.9 16.9 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1503 b:28.2 occ:1.00 O B:HOH2865 2.0 23.1 1.0 O2B B:ADP1488 2.1 17.7 1.0 O B:HOH2847 2.1 28.7 1.0 OG1 B:THR45 2.1 11.4 1.0 O B:HOH2915 2.2 27.0 1.0 O B:HOH2950 2.2 21.4 1.0 CB B:THR45 3.1 32.5 1.0 PB B:ADP1488 3.3 25.1 1.0 O3B B:ADP1488 3.4 30.5 1.0 N B:THR45 3.8 8.2 1.0 OD2 B:ASP165 4.0 9.1 1.0 CA B:THR45 4.0 16.1 1.0 OE2 B:GLU166 4.2 7.9 1.0 O2A B:ADP1488 4.2 25.2 1.0 O1B B:ADP1488 4.2 19.7 1.0 CG2 B:THR45 4.2 9.4 1.0 OD1 B:ASP165 4.2 3.8 1.0 O3A B:ADP1488 4.4 28.8 1.0 O B:HOH3038 4.5 42.6 1.0 O B:HOH2870 4.6 31.7 1.0 CG B:ASP165 4.6 20.3 1.0 NE2 B:GLN89 4.6 53.7 1.0 CB B:LYS44 4.7 10.6 1.0 CE B:LYS44 4.7 11.8 1.0 PA B:ADP1488 4.8 28.3 1.0 C B:LYS44 4.9 6.2 1.0 NZ B:LYS44 4.9 7.5 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1501 b:20.7 occ:1.00 O C:HOH3073 2.0 27.9 1.0 O C:HOH2829 2.1 16.1 1.0 O C:HOH3074 2.1 16.1 1.0 O2B C:ADP1487 2.1 14.3 1.0 OG1 C:THR45 2.2 10.3 1.0 O C:HOH2911 2.3 22.0 1.0 CB C:THR45 3.2 15.0 1.0 PB C:ADP1487 3.4 16.8 1.0 O3B C:ADP1487 3.6 25.6 1.0 N C:THR45 4.0 15.9 1.0 OD2 C:ASP165 4.0 6.0 1.0 O2A C:ADP1487 4.0 21.0 1.0 OE2 C:GLU166 4.1 13.7 1.0 OD1 C:ASP165 4.2 8.9 1.0 CA C:THR45 4.2 15.2 1.0 CG2 C:THR45 4.3 17.5 1.0 O1B C:ADP1487 4.3 19.2 1.0 NE2 C:GLN89 4.4 95.9 1.0 O3A C:ADP1487 4.5 17.6 1.0 CG C:ASP165 4.6 20.8 1.0 O C:HOH2879 4.7 31.7 1.0 O C:HOH3080 4.7 29.8 1.0 CD C:GLU166 4.7 20.2 1.0 PA C:ADP1487 4.8 20.0 1.0 O C:HOH2854 4.8 21.4 1.0 CB C:LYS44 4.8 13.9 1.0 CE C:LYS44 4.9 16.1 1.0

G.Verdon, S.V.Albers, B.W.Dijkstra, A.J.Driessen, A.M.Thunnissen. Crystal Structures of the Atpase Subunit of the Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free and Nucleotide-Bound Conformations J.Mol.Biol. V. 330 343 2003.
ISSN: ISSN 0022-2836
PubMed: 12823973
DOI: 10.1016/S0022-2836(03)00575-8