Magnesium in PDB 1vc6: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, Cleaved in Imidazole and MG2+ Solutions

The structure of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, Cleaved in Imidazole and MG2+ Solutions, PDB code: 1vc6 was solved by A.Ke, K.Zhou, F.Ding, J.H.D.Cate, J.A.Doudna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.35 / 2.80
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	109.159, 109.159, 190.603, 90.00, 90.00, 120.00
R / Rfree (%)	24.7 / 28.4

The binding sites of Magnesium atom in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, Cleaved in Imidazole and MG2+ Solutions (pdb code 1vc6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, Cleaved in Imidazole and MG2+ Solutions, PDB code: 1vc6:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, Cleaved in Imidazole and MG2+ Solutions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, Cleaved in Imidazole and MG2+ Solutions within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:57.9 occ:0.80 O6 B:G159 3.4 57.8 1.0 N7 B:G158 4.0 55.5 1.0 N7 B:G159 4.0 60.0 1.0 O6 B:G158 4.0 58.2 1.0 C6 B:G159 4.3 58.3 1.0 C5 B:G158 4.4 54.1 1.0 C6 B:G158 4.5 55.0 1.0 C5 B:G159 4.5 59.0 1.0 O2' B:C141 4.7 78.0 1.0 C8 B:G158 4.8 56.1 1.0

A.Ke, K.Zhou, F.Ding, J.H.D.Cate, J.A.Doudna. A Conformational Switch Controls Hepatitis Delta Virus Ribozyme Catalysis Nature V. 429 201 2004.
ISSN: ISSN 0028-0836
PubMed: 15141216
DOI: 10.1038/NATURE02522